JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SENP6_chr6_75596880_75723281	1/0	c0002	3339	45	19	1	23	0	1	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/1	c0003	3339	26	2	7	7	4	5	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0004	3339	10	10	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0005	3339	5	5	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0006	3339	3	0	0	3	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0007	3339	3	3	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0008	3339	2	2	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0009	3339	2	0	0	2	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0010	3339	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0011	3339	1	0	0	1	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0012	3339	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0013	3339	1	0	1	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0014	3339	1	0	0	0	0	1	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0015	3339	1	0	1	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0016	3339	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0017	3339	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	c0018	3339	1	0	0	0	0	1	copy fasta	SENP6	chr6	75596880	75723281
SENP7_chr3_101319205_101518212	0/1	c0001	3153	146	18	37	75	5	10	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0002	3153	91	17	14	51	2	7	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	1/0	c0003	3153	75	22	11	30	2	9	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0004	3153	25	9	9	0	5	2	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0005	3153	8	0	0	8	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0006	3153	6	6	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0007	3153	4	4	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0008	3153	3	3	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0009	3153	3	2	1	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0010	3153	3	3	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0011	3153	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0012	3153	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0013	3153	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0014	3153	1	0	0	1	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0015	3153	1	0	0	1	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	c0016	3153	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP8_chr15_72113403_72148692	0/1	c0001	639	385	88	66	180	14	36	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	1/0	c0002	639	13	10	2	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	c0003	639	2	0	0	0	0	2	copy fasta	SENP8	chr15	72113403	72148692
SEPHS1_chr10_13312428_13353293	0/1	c0001	1179	217	61	48	81	7	19	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	1/0	c0002	1179	111	17	26	44	9	14	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	c0003	1179	26	0	4	20	0	2	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	c0004	1179	16	5	1	10	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	c0005	1179	3	2	1	0	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	c0006	1179	2	2	0	0	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	c0007	1179	1	1	0	0	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	c0008	1179	1	0	0	0	0	1	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	c0009	1179	1	0	0	1	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS2_chr16_30438631_30450874	1/1	c0001	1347	319	78	72	117	16	34	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	c0002	1347	12	0	0	12	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	c0003	1347	5	5	0	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	c0004	1347	2	2	0	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	c0005	1347	1	1	0	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874