JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEPHS2_chr16_30438631_30450874	0/0	c0006	1347	1	1	0	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	c0007	1347	1	0	0	1	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	c0008	1347	1	1	0	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPSECS_chr4_25115014_25165449	1/1	c0001	1506	385	74	71	184	13	41	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	c0002	1506	61	16	10	27	1	7	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	c0003	1506	5	4	1	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	c0004	1506	1	0	0	1	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	c0005	1506	1	0	0	1	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	c0006	1506	1	0	0	1	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	c0007	1506	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	c0008	1506	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPTIN10_chr2_109537799_109618966	1/1	c0001	1365	392	91	73	167	14	45	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	c0002	1365	4	4	0	0	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	c0003	1365	2	0	0	2	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	c0004	1365	1	0	0	0	0	1	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	c0005	1365	1	1	0	0	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	c0006	1365	1	0	0	1	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	c0007	1365	1	1	0	0	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	c0008	1365	1	1	0	0	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	c0009	1365	1	0	1	0	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN11_chr4_76944752_77043615	1/1	c0001	1290	368	81	58	171	14	42	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	c0002	1290	1	0	0	1	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	c0003	1290	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN12_chr16_4772606_4793345	1/0	c0001	1077	262	71	51	103	11	25	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/1	c0002	1077	135	11	26	71	5	21	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/0	c0003	1077	8	4	1	3	0	0	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/0	c0004	1077	7	1	0	6	0	0	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/0	c0005	1077	7	7	0	0	0	0	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/0	c0006	1077	2	2	0	0	0	0	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/0	c0007	1077	1	0	0	1	0	0	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN14_chr7_55788540_55867752	1/1	c0001	1299	370	87	59	166	15	41	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0002	1299	5	4	1	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0003	1299	3	2	1	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0004	1299	2	0	1	0	1	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0005	1299	2	0	2	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0006	1299	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0007	1299	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0008	1299	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0009	1299	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0010	1299	1	0	0	1	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0011	1299	1	0	0	0	0	1	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0012	1299	1	0	0	1	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	c0013	1299	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN1_chr16_30373135_30387561	0/0	c0001	1119	232	70	46	81	10	25	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	1/1	c0002	1119	69	16	23	17	2	9	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	c0003	1119	3	0	0	2	0	1	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	c0004	1119	2	0	1	0	0	1	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	c0005	1119	1	0	0	1	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	c0006	1119	1	0	1	0	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	c0007	1158	1	0	1	0	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561