JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEPTIN1_chr16_30373135_30387561	0/0	c0008	1119	1	0	0	1	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN2_chr2_241310925_241359027	1/1	c0001	1086	404	86	69	192	13	42	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	c0002	1086	1	0	1	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	c0003	1086	1	0	0	0	1	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	c0004	1086	1	0	0	1	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	c0005	1086	1	0	0	1	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN3_chr22_41964443_42003221	0/0	c0001	2571	147	6	19	96	5	21	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	1/1	c0002	2571	110	35	32	20	13	8	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0003	2571	62	20	19	11	0	12	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0004	2571	9	9	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0005	2571	7	5	2	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0006	2571	7	6	1	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0007	2571	4	4	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0008	2571	2	0	0	2	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0009	2571	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0010	2571	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0011	2571	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0012	2571	1	0	0	1	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0013	2571	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0014	2571	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0015	2571	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0016	2571	1	0	1	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0017	2571	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0018	2571	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0019	2571	1	0	0	0	0	1	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	c0020	2571	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN4_chr17_58515256_58549328	0/1	c0001	2991	134	25	33	62	2	11	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0002	2991	70	12	5	40	2	11	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0003	2991	64	14	10	34	3	3	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	1/0	c0004	2991	22	3	12	0	3	3	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0005	2991	20	15	2	0	2	1	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0006	2991	13	13	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0007	2991	7	1	2	0	2	2	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0008	2991	5	0	2	0	0	3	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0009	2991	4	4	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0010	2991	3	2	1	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0011	2991	2	0	0	0	0	2	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0012	2991	2	0	0	2	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0013	2991	2	0	0	2	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0014	2991	2	0	2	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0015	2991	1	0	0	1	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0016	2991	1	0	0	1	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0017	2991	1	0	0	1	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0018	2991	1	1	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0019	2991	1	0	0	0	0	1	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0020	2991	1	0	0	1	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0021	2991	1	0	1	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0022	2991	1	0	0	0	0	1	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0023	2991	1	1	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	c0024	2991	1	1	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328