JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEPTIN5_chr22_19709503_19728319	1/1	c0001	1110	381	88	69	160	18	44	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN5_chr22_19709503_19728319	0/0	c0002	1110	1	0	1	0	0	0	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN5_chr22_19709503_19728319	0/0	c0003	1110	1	0	0	1	0	0	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN5_chr22_19709503_19728319	0/0	c0004	1110	1	0	0	1	0	0	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN6_chrX_119611945_119698168	1/1	c0001	1284	225	56	39	96	7	25	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	c0002	1284	24	18	3	0	0	3	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	c0003	1285	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	c0004	1285	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	c0005	1284	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN7_chr7_35796057_35912110	1/1	c0001	1314	334	89	58	148	10	27	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	c0002	1314	9	1	2	6	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	c0003	1314	1	0	0	0	0	1	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	c0004	1314	1	1	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	c0005	1314	1	1	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN8_chr5_132745819_132782239	0/0	c0001	1452	214	79	22	106	0	7	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	1/1	c0002	1452	97	5	30	37	4	19	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	c0003	1452	5	4	1	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	c0004	1452	2	0	2	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	c0005	1452	2	0	0	2	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	c0006	1452	1	1	0	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	c0007	1452	1	0	0	1	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	c0008	1452	1	0	1	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	c0009	1452	1	0	0	1	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	c0010	1452	1	1	0	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	c0011	1452	1	0	0	1	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN9_chr17_77276499_77505593	0/1	c0001	1761	115	44	27	19	3	21	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	1/0	c0002	1761	23	18	3	0	1	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	c0003	1761	5	2	3	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	c0004	1761	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	c0005	1761	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	c0006	1761	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	c0007	1761	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	c0008	1761	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	c0009	1761	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77314518_77505593	0/1	c0001	1707	119	42	30	18	3	25	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	1/0	c0002	1707	24	18	4	0	1	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	c0003	1707	5	2	3	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	c0004	1707	3	0	1	1	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	c0005	1707	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	c0006	1707	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	c0007	1707	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	c0008	1707	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	c0009	1707	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	c0010	1707	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SERAC1_chr6_158104519_158173262	0/1	c0001	1965	254	51	41	122	9	30	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	1/0	c0002	1965	89	18	16	37	5	12	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	c0003	1965	9	8	1	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	c0004	1965	3	1	0	1	0	1	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	c0005	1965	3	3	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	c0006	1965	3	3	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262