JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SERHL2_chr22_42548956_42579382	0/0	c0024	945	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERINC1_chr6_122438351_122476807	1/1	c0001	1362	354	79	63	169	16	25	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	c0002	1362	8	8	0	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	c0003	1362	1	0	0	0	0	1	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	c0004	1362	1	0	1	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	c0005	1362	1	1	0	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	c0006	1362	1	0	0	1	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC2_chr1_31408213_31439678	0/0	c0001	1371	87	55	12	11	5	4	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	1/0	c0002	1368	79	14	13	40	0	11	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0003	1371	73	10	15	42	2	4	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0004	1371	63	7	5	37	1	13	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0005	1371	19	0	7	9	0	3	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0006	1368	12	1	3	6	0	2	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/1	c0007	1371	11	1	5	0	2	2	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0008	1368	5	3	2	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0009	1371	4	3	1	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0010	1371	4	0	3	0	1	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0011	1368	4	0	1	0	1	2	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0012	1371	1	0	0	0	1	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0013	1371	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0014	1371	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0015	1371	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0016	1371	1	0	0	0	0	1	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0017	1368	1	0	0	0	0	1	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0018	1371	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0019	1371	1	0	0	0	1	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0020	1371	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0021	1368	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0022	1368	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0023	1371	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0024	1371	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0025	1371	1	0	1	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	c0026	1371	1	0	0	0	0	1	copy fasta	SERINC2	chr1	31408213	31439678
SERINC3_chr20_44492441_44527070	1/1	c0001	1422	294	82	68	102	10	30	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	c0002	1422	1	0	0	1	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	c0003	1422	1	1	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	c0004	1422	1	1	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	c0005	1422	1	1	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	c0006	1422	1	0	0	1	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	c0007	1422	1	1	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC4_chr15_43789162_43805220	1/1	c0001	1557	361	93	58	159	8	41	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	c0002	1559	10	0	0	10	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	c0003	1559	4	0	0	4	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	c0004	1557	3	0	0	3	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	c0005	1557	1	1	0	0	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	c0006	1557	1	0	0	0	0	1	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	c0007	1557	1	0	0	0	0	1	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	c0008	1557	1	0	0	0	0	1	copy fasta	SERINC4	chr15	43789162	43805220
SERINC5_chr5_80133727_80261048	1/1	c0001	1386	209	76	51	48	11	21	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	c0002	1386	64	4	12	35	5	8	copy fasta	SERINC5	chr5	80133727	80261048