JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SERINC5_chr5_80133727_80261048	0/0	c0003	1386	3	1	2	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	c0004	1386	2	2	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	c0005	1386	2	2	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	c0006	1386	2	2	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	c0007	1386	1	0	1	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	c0008	1386	1	0	0	1	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	c0009	1386	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	c0010	1386	1	0	0	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERP1_chr3_150536998_150551496	1/1	c0001	201	433	95	80	192	14	50	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	c0002	201	1	1	0	0	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP2_chr13_44368824_44402714	1/1	c0001	198	353	94	72	137	10	38	copy fasta	SERP2	chr13	44368824	44402714
SERP2_chr13_44368824_44402714	0/0	c0002	198	1	0	0	1	0	0	copy fasta	SERP2	chr13	44368824	44402714
SERPINA10_chr14_94275460_94298268	0/0	c0001	1335	143	22	6	102	1	12	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0002	1335	132	5	39	60	10	18	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/1	c0003	1335	84	33	26	9	2	13	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0004	1335	17	17	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0005	1335	11	10	1	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0006	1335	8	0	0	5	0	3	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0007	1335	7	0	0	7	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0008	1335	3	2	1	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0009	1335	3	0	0	3	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0010	1335	2	2	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0011	1335	1	1	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0012	1335	1	0	0	1	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0013	1335	1	0	0	0	0	1	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0014	1335	1	1	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0015	1335	1	0	0	0	0	1	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0016	1335	1	0	0	0	0	1	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0017	1335	1	1	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0018	1335	1	0	0	0	0	1	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0019	1335	1	0	1	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0020	1335	1	0	0	1	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	c0021	1335	1	0	0	0	1	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA11_chr14_94437464_94457800	1/1	c0001	1269	334	82	55	165	5	25	copy fasta	SERPINA11	chr14	94437464	94457800
SERPINA11_chr14_94437464_94457800	0/0	c0002	1269	100	3	22	47	9	19	copy fasta	SERPINA11	chr14	94437464	94457800
SERPINA11_chr14_94437464_94457800	0/0	c0003	1269	11	10	1	0	0	0	copy fasta	SERPINA11	chr14	94437464	94457800
SERPINA11_chr14_94437464_94457800	0/0	c0004	1269	2	2	0	0	0	0	copy fasta	SERPINA11	chr14	94437464	94457800
SERPINA11_chr14_94437464_94457800	0/0	c0005	1269	2	0	2	0	0	0	copy fasta	SERPINA11	chr14	94437464	94457800
SERPINA11_chr14_94437464_94457800	0/0	c0006	1269	1	1	0	0	0	0	copy fasta	SERPINA11	chr14	94437464	94457800
SERPINA11_chr14_94437464_94457800	0/0	c0007	1269	1	0	0	1	0	0	copy fasta	SERPINA11	chr14	94437464	94457800
SERPINA11_chr14_94437464_94457800	0/0	c0008	1269	1	0	0	1	0	0	copy fasta	SERPINA11	chr14	94437464	94457800
SERPINA12_chr14_94482279_94514469	1/1	c0001	1245	415	67	79	204	16	47	copy fasta	SERPINA12	chr14	94482279	94514469
SERPINA12_chr14_94482279_94514469	0/0	c0002	1245	14	14	0	0	0	0	copy fasta	SERPINA12	chr14	94482279	94514469
SERPINA12_chr14_94482279_94514469	0/0	c0003	1245	5	5	0	0	0	0	copy fasta	SERPINA12	chr14	94482279	94514469
SERPINA12_chr14_94482279_94514469	0/0	c0004	1245	4	3	1	0	0	0	copy fasta	SERPINA12	chr14	94482279	94514469
SERPINA12_chr14_94482279_94514469	0/0	c0005	1245	2	2	0	0	0	0	copy fasta	SERPINA12	chr14	94482279	94514469
SERPINA12_chr14_94482279_94514469	0/0	c0006	1245	2	2	0	0	0	0	copy fasta	SERPINA12	chr14	94482279	94514469
SERPINA12_chr14_94482279_94514469	0/0	c0007	1245	1	1	0	0	0	0	copy fasta	SERPINA12	chr14	94482279	94514469
SERPINA12_chr14_94482279_94514469	0/0	c0008	1245	1	0	0	1	0	0	copy fasta	SERPINA12	chr14	94482279	94514469
SERPINA12_chr14_94482279_94514469	0/0	c0009	1245	1	0	0	1	0	0	copy fasta	SERPINA12	chr14	94482279	94514469