Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABHD12B_chr14_50867053_50909970	1/1	c0001	1089	146	26	29	61	9	19	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0002	1089	89	13	11	53	3	9	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0003	1089	34	8	6	11	0	9	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0004	1089	27	6	3	18	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0005	1089	21	3	4	11	0	3	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0006	1089	16	9	4	3	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0007	1089	14	12	2	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0008	1089	13	2	7	4	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0009	1089	4	4	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0010	1089	2	0	2	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0011	1089	2	0	0	2	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0012	1089	2	2	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0013	1089	2	2	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0014	1089	1	0	0	0	1	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0015	1089	1	0	0	0	1	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0016	1089	1	0	0	1	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12B_chr14_50867053_50909970	0/0	c0017	1089	1	1	0	0	0	0	copy fasta	ABHD12B	chr14	50867053	50909970
ABHD12_chr20_25295214_25395835	0/1	c0001	1197	168	40	31	76	5	15	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	c0002	1197	81	18	34	2	7	20	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	1/0	c0003	1197	57	29	5	22	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	c0004	1197	3	0	0	0	0	3	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	c0005	1197	2	2	0	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	c0006	1197	2	1	1	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	c0007	1197	1	0	1	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	c0008	1197	1	1	0	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD12_chr20_25295214_25395835	0/0	c0009	1197	1	1	0	0	0	0	copy fasta	ABHD12	chr20	25295214	25395835
ABHD13_chr13_108213392_108239243	1/1	c0001	1014	385	91	78	162	18	34	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	c0002	1014	3	0	0	3	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	c0003	1014	1	1	0	0	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD13_chr13_108213392_108239243	0/0	c0004	1014	1	0	0	1	0	0	copy fasta	ABHD13	chr13	108213392	108239243
ABHD14A_chr3_51970064_51986196	1/1	c0001	816	289	54	48	133	13	39	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	c0002	816	31	25	1	4	0	1	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	c0003	816	7	7	0	0	0	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	c0004	816	6	1	5	0	0	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	c0005	816	4	0	3	0	1	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	c0006	816	3	0	0	3	0	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	c0007	816	1	1	0	0	0	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	c0008	816	1	0	0	0	0	1	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	c0009	816	1	0	1	0	0	0	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14A_chr3_51970064_51986196	0/0	c0010	816	1	0	0	0	0	1	copy fasta	ABHD14A	chr3	51970064	51986196
ABHD14B_chr3_51963515_51979049	1/1	c0001	633	314	79	59	120	14	40	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD14B_chr3_51963515_51979049	0/0	c0002	633	10	9	1	0	0	0	copy fasta	ABHD14B	chr3	51963515	51979049
ABHD15_chr17_29555547_29572037	0/1	c0001	1407	234	44	47	110	8	24	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	c0002	1407	102	30	11	49	3	9	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	1/0	c0003	1407	52	6	19	8	5	13	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	c0004	1407	13	5	2	2	0	4	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	c0005	1407	5	5	0	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	c0006	1407	5	1	4	0	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	c0007	1407	2	0	0	0	2	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	c0008	1407	1	0	0	1	0	0	copy fasta	ABHD15	chr17	29555547	29572037