JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP10B_chr5_160558120_160857211	0/0	c0021	4386	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0022	4386	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0023	4386	1	0	0	0	1	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0024	4386	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0025	4386	1	0	0	0	0	1	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0026	4386	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0027	4386	1	0	1	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0028	4386	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0029	4386	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0030	4386	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0031	4386	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0032	4386	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0033	4386	1	0	1	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0034	4386	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0035	4386	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0036	4386	1	0	0	1	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0037	4386	1	0	0	0	1	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10B_chr5_160558120_160857211	0/0	c0038	4386	1	1	0	0	0	0	copy fasta	ATP10B	chr5	160558120	160857211
ATP10D_chr4_47480275_47598486	0/1	c0001	4281	41	1	5	31	0	3	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	1/0	c0002	4281	32	4	8	0	4	15	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0003	4281	29	8	6	11	2	2	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0004	4281	27	15	2	7	0	3	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0005	4281	26	2	8	13	2	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0006	4281	20	0	1	16	2	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0007	4281	14	6	5	0	0	3	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0008	4281	12	5	3	1	0	3	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0009	4281	12	0	0	12	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0010	4281	11	10	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0011	4281	10	0	1	8	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0012	4281	8	3	3	0	2	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0013	4281	5	5	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0014	4281	5	0	0	5	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0015	4281	4	1	1	0	1	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0016	4281	4	4	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0017	4281	4	0	4	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0018	4281	3	0	2	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0019	4281	3	0	2	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0020	4281	3	3	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0021	4281	3	3	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0022	4281	3	0	2	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0023	4281	2	0	2	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0024	4281	2	2	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0025	4281	2	2	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0026	4281	2	2	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0027	4281	2	0	2	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0028	4281	2	2	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0029	4281	2	0	2	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0030	4281	2	2	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0031	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0032	4281	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486