JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SERPINA4_chr14_94556442_94574906	0/0	c0009	1284	1	0	0	1	0	0	copy fasta	SERPINA4	chr14	94556442	94574906
SERPINA4_chr14_94556442_94574906	0/0	c0010	1284	1	1	0	0	0	0	copy fasta	SERPINA4	chr14	94556442	94574906
SERPINA4_chr14_94556442_94574906	0/0	c0011	1284	1	0	0	1	0	0	copy fasta	SERPINA4	chr14	94556442	94574906
SERPINA5_chr14_94576426_94598118	1/0	c0001	1221	198	6	43	118	9	21	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0002	1221	110	44	6	54	1	5	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/1	c0003	1221	78	23	18	14	5	17	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0004	1221	30	5	4	14	3	4	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0005	1221	9	8	1	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0006	1221	8	0	0	8	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0007	1221	5	0	0	5	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0008	1221	3	3	0	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0009	1221	3	0	0	3	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0010	1221	3	3	0	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0011	1221	2	2	0	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0012	1221	2	0	0	2	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0013	1221	2	0	0	2	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0014	1221	1	0	0	1	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0015	1221	1	1	0	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0016	1221	1	1	0	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0017	1221	1	1	0	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0018	1221	1	1	0	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0019	1221	1	0	1	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0020	1221	1	0	1	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0021	1221	1	0	0	1	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0022	1221	1	0	0	0	0	1	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0023	1221	1	0	1	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA5_chr14_94576426_94598118	0/0	c0024	1221	1	0	1	0	0	0	copy fasta	SERPINA5	chr14	94576426	94598118
SERPINA6_chr14_94299248_94328336	0/1	c0001	1218	289	40	48	167	4	29	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0002	1218	44	27	9	2	2	4	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0003	1218	39	3	10	21	2	3	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0004	1218	16	1	7	0	1	7	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0005	1218	11	5	3	1	1	1	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0006	1218	7	4	0	0	0	3	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0007	1218	6	6	0	0	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0008	1218	4	4	0	0	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0009	1218	2	0	0	2	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0010	1218	2	0	0	2	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0011	1218	2	0	0	2	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0012	1218	1	1	0	0	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0013	1218	1	0	0	1	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0014	1218	1	1	0	0	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0015	1218	1	0	1	0	0	0	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA6_chr14_94299248_94328336	0/0	c0016	1218	1	0	0	0	0	1	copy fasta	SERPINA6	chr14	94299248	94328336
SERPINA7_chrX_106027435_106043727	1/1	c0001	1248	246	56	47	112	7	22	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA7_chrX_106027435_106043727	0/0	c0002	1248	48	5	12	25	0	6	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA7_chrX_106027435_106043727	0/0	c0003	1248	9	9	0	0	0	0	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA7_chrX_106027435_106043727	0/0	c0004	1248	3	0	0	3	0	0	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA7_chrX_106027435_106043727	0/0	c0005	1248	1	1	0	0	0	0	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA7_chrX_106027435_106043727	0/0	c0006	1248	1	1	0	0	0	0	copy fasta	SERPINA7	chrX	106027435	106043727
SERPINA9_chr14_94457721_94481197	1/0	c0001	1254	87	27	10	42	2	5	copy fasta	SERPINA9	chr14	94457721	94481197