JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SERPINB3_chr18_63650197_63666893	0/0	c0010	1055	1	0	0	1	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	c0011	1173	1	0	1	0	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	c0012	1173	1	1	0	0	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	c0013	1176	1	1	0	0	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	c0014	1173	1	0	0	0	0	1	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB4_chr18_63632259_63649256	1/1	c0001	1173	395	77	65	200	17	34	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	c0002	1173	17	14	2	0	1	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	c0003	1173	3	0	0	3	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	c0004	1173	2	0	2	0	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	c0005	1173	2	1	1	0	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	c0006	1173	1	0	0	1	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	c0007	1173	1	1	0	0	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	c0008	1173	1	1	0	0	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	c0009	1173	1	0	0	1	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	c0010	1173	1	0	0	1	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB5_chr18_63471958_63510085	0/0	c0001	1128	110	12	25	54	8	11	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/1	c0002	1128	86	7	23	42	3	10	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0003	1128	56	26	10	9	1	10	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0004	1128	35	11	2	21	0	1	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0005	1128	34	1	8	19	3	3	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0006	1128	31	1	1	29	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0007	1128	20	15	0	4	0	1	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0008	1128	14	6	2	3	0	3	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0009	1128	7	1	1	1	1	3	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0010	1128	4	0	0	4	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0011	1128	2	0	0	1	0	1	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0012	1128	2	2	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0013	1128	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0014	1128	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0015	1128	1	0	0	0	0	1	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0016	1128	1	0	0	1	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0017	1128	1	0	0	1	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	1/0	c0018	1128	1	0	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0019	1128	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0020	1128	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	c0021	1128	1	0	0	1	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB6_chr6_2943159_2976567	1/0	c0001	1131	166	76	22	46	7	14	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/1	c0002	1131	119	6	28	68	7	9	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	c0003	1131	85	2	19	50	3	11	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	c0004	1131	4	0	0	4	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	c0005	1131	2	0	0	2	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	c0006	1131	2	2	0	0	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	c0007	1131	1	0	0	1	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	c0008	1131	1	0	1	0	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	c0009	1131	1	0	0	0	1	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	c0010	1131	1	1	0	0	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	c0011	1131	1	0	0	1	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	c0012	1131	1	1	0	0	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB7_chr18_63770418_63810370	1/0	c0001	1143	315	64	47	162	12	29	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/1	c0002	1143	58	9	17	21	4	6	copy fasta	SERPINB7	chr18	63770418	63810370