JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SERPINB7_chr18_63770418_63810370	0/0	c0003	1143	26	6	6	10	0	4	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	c0004	1143	19	17	2	0	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	c0005	1143	5	0	4	0	1	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	c0006	1143	3	0	0	3	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	c0007	1143	2	0	0	2	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	c0008	1143	1	0	0	1	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	c0009	1143	1	0	0	1	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	c0010	1143	1	0	0	0	1	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	c0011	1143	1	0	0	0	0	1	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB8_chr18_63965081_63994374	0/0	c0001	1125	90	7	23	37	4	19	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0002	1125	58	16	12	21	6	3	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	1/0	c0003	1125	53	11	10	24	2	5	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0004	1125	44	3	8	26	3	4	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0005	1125	42	24	4	11	2	1	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0006	1125	37	2	9	22	1	3	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0007	1125	34	4	3	21	0	6	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0008	1125	21	2	0	19	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0009	1125	19	15	0	3	0	1	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0010	1125	8	2	1	5	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0011	1125	7	2	0	4	0	1	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0012	1125	7	0	2	5	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/1	c0013	1125	6	0	0	4	0	1	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0014	1125	5	0	0	5	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0015	1125	5	1	1	3	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0016	1125	4	0	0	4	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0017	1125	4	3	0	1	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0018	1125	3	0	0	3	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0019	1125	3	0	2	1	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0020	1125	2	2	0	0	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0021	1125	2	1	1	0	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0022	1125	2	0	0	1	0	1	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0023	1125	1	0	0	1	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0024	1125	1	0	0	0	0	1	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0025	1125	1	0	0	1	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0026	1125	1	1	0	0	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0027	1125	1	1	0	0	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0028	1125	1	0	0	0	0	1	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0029	1125	1	0	0	0	0	1	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0030	1125	1	0	0	1	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0031	1125	1	0	0	1	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	c0032	1125	1	1	0	0	0	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB9_chr6_2882270_2908309	1/1	c0001	1131	447	87	81	215	17	45	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	c0002	1131	5	5	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	c0003	1131	2	1	0	0	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	c0004	1131	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	c0005	1131	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	c0006	1131	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	c0007	1131	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	c0008	1131	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	c0009	1131	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309