JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SERPINE2_chr2_223970045_224044286	0/0	c0013	1194	1	1	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	c0014	1194	1	1	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE3_chr13_51334691_51369735	1/1	c0001	1215	408	84	69	196	15	42	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	c0002	1215	10	0	3	4	1	2	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	c0003	1215	6	6	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	c0004	1215	2	0	2	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	c0005	1215	1	1	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	c0006	1215	1	1	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	c0007	1215	1	1	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	c0008	1215	1	0	0	1	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	c0009	1215	1	1	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	c0010	1215	1	0	0	1	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINF1_chr17_1757060_1782565	0/0	c0001	1257	190	75	26	75	5	9	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0002	1257	133	9	32	70	6	16	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/1	c0003	1257	56	6	16	21	4	8	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	1/0	c0004	1257	34	0	3	20	0	10	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0005	1257	5	0	0	5	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0006	1257	4	1	1	2	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0007	1257	3	0	0	3	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0008	1257	2	0	0	0	0	2	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0009	1257	2	2	0	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0010	1257	2	1	1	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0011	1257	2	0	1	0	0	1	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0012	1257	1	1	0	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0013	1257	1	0	0	1	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0014	1257	1	0	0	1	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0015	1257	1	0	0	0	1	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0016	1330	1	0	0	1	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0017	1257	1	0	0	1	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0018	1257	1	0	1	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0019	1257	1	1	0	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0020	1257	1	1	0	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0021	1257	1	0	1	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	c0022	1257	1	1	0	0	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF2_chr17_1737871_1760265	0/1	c0001	1476	226	51	43	107	6	18	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0002	1476	95	18	19	39	3	16	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0003	1476	83	21	17	37	2	6	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0004	1476	11	3	2	4	1	1	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0005	1476	10	0	0	10	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0006	1476	7	0	4	0	3	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0007	1476	3	0	0	3	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0008	1476	2	0	0	0	0	2	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0009	1476	1	1	0	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0010	1476	1	0	1	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0011	1476	1	0	0	1	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0012	1476	1	1	0	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0013	1476	1	0	0	0	0	1	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0014	1476	1	1	0	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0015	1476	1	0	0	0	1	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	c0016	1476	1	0	0	1	0	0	copy fasta	SERPINF2	chr17	1737871	1760265