JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SERTAD2_chr2_64626621_64658913	0/0	c0002	945	1	0	0	0	1	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	c0003	945	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	c0004	945	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	c0005	945	1	1	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD3_chr19_40435844_40449335	1/1	c0001	591	326	73	61	148	15	27	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	c0002	591	46	19	6	2	3	16	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	c0003	591	4	4	0	0	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	c0004	591	2	0	1	0	0	1	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD4_chr1_210227796_210251255	1/1	c0001	1071	406	95	68	183	18	40	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	c0002	1071	3	0	2	0	0	1	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	c0003	1071	2	2	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	c0004	1071	2	2	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	c0005	1071	1	0	1	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	c0006	1071	1	1	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	c0007	1071	1	0	1	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	c0008	1071	1	0	0	1	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	c0009	1071	1	0	0	0	0	1	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	c0010	1071	1	0	1	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	c0011	1071	1	0	1	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTM1_chr13_36669020_36702839	1/1	c0001	324	433	98	74	195	18	46	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	c0002	324	3	0	0	3	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	c0003	324	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	c0004	324	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM2_chrX_111506645_111527399	1/1	c0001	273	253	78	39	95	11	28	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	c0002	273	5	0	0	5	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	c0003	273	1	0	0	1	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SESN1_chr6_108979309_109099846	1/1	c0001	1656	143	54	24	38	5	20	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	c0002	1656	26	1	6	8	3	8	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	c0003	1656	6	6	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	c0004	1656	4	2	2	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	c0005	1656	2	0	0	2	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	c0006	1653	2	2	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	c0007	1656	1	1	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN2_chr1_28254518_28287491	0/0	c0001	1443	291	80	63	101	16	31	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0002	1443	13	0	0	13	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0003	1443	8	0	2	4	0	2	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0004	1443	5	0	0	4	0	1	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0005	1443	5	0	0	5	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0006	1443	4	0	0	3	0	1	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0007	1443	4	4	0	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0008	1443	3	3	0	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0009	1443	1	0	1	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0010	1443	1	1	0	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0011	1443	1	1	0	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0012	1443	1	1	0	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	c0013	1443	1	0	0	0	0	1	copy fasta	SESN2	chr1	28254518	28287491
SESN3_chr11_95160513_95236202	1/1	c0001	1479	375	70	66	180	16	41	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	c0002	1479	13	8	2	2	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	c0003	1479	2	2	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	c0004	1497	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202