JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP10D_chr4_47480275_47598486	0/0	c0033	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0034	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0035	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0036	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0037	4281	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0038	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0039	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0040	4281	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0041	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0042	4281	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0043	4281	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0044	4281	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0045	4281	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0046	4281	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0047	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0048	4281	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0049	4281	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0050	4281	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0051	4281	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0052	4281	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0053	4281	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0054	4281	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0055	4281	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0056	4281	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0057	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0058	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0059	4281	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0060	4281	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0061	4281	1	0	1	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0062	4281	1	0	0	0	1	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0063	4281	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0064	4281	1	1	0	0	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0065	4281	1	0	0	0	0	1	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0066	4281	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP10D_chr4_47480275_47598486	0/0	c0067	4281	1	0	0	1	0	0	copy fasta	ATP10D	chr4	47480275	47598486
ATP11A_chr13_112685038_112892168	0/0	c0001	3405	52	11	14	18	3	6	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0002	3405	41	17	5	17	0	2	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	1/0	c0003	3405	25	2	7	4	2	9	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0004	3405	22	8	11	1	0	2	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0005	3405	18	0	3	9	3	3	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0006	3405	17	2	3	9	0	3	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0007	3405	7	0	2	5	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0008	3405	6	0	1	4	1	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0009	3405	5	5	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0010	3405	5	0	0	3	0	2	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0011	3405	5	0	0	5	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0012	3405	4	0	2	1	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0013	3405	3	3	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0014	3405	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0015	3405	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168