JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SESN3_chr11_95160513_95236202	0/0	c0005	1479	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESTD1_chr2_179096678_179269832	0/1	c0001	2091	170	42	29	69	6	23	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	c0002	2091	64	32	3	21	2	6	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	1/0	c0003	2091	24	10	4	3	2	4	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	c0004	2091	4	0	2	0	2	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	c0005	2091	3	3	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	c0006	2091	3	0	0	3	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	c0007	2091	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	c0008	2091	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	c0009	2091	1	0	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	c0010	2091	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	c0011	2091	1	0	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	c0012	2091	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SETBP1_chr18_44675888_45073510	0/1	c0001	4791	70	38	11	13	4	3	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0002	4791	18	11	5	1	0	1	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0003	4791	15	1	9	4	0	1	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0004	4791	10	1	1	8	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	1/0	c0005	4791	7	1	3	0	0	2	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0006	4792	4	2	0	2	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0007	4792	2	0	1	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0008	4792	2	0	2	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0009	4791	2	2	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0010	4791	2	2	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0011	4791	1	1	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0012	4791	1	0	1	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0013	4791	1	0	1	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0014	4791	1	1	0	0	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0015	4791	1	0	0	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0016	4791	1	0	0	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0017	4791	1	0	0	1	0	0	copy fasta	SETBP1	chr18	44675888	45073510
SETBP1_chr18_44675888_45073510	0/0	c0018	4791	1	0	0	0	0	1	copy fasta	SETBP1	chr18	44675888	45073510
SETD1A_chr16_30952754_30989664	1/1	c0001	5124	216	53	61	60	15	25	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0002	5124	10	10	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0003	5124	8	0	0	8	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0004	5124	5	5	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0005	5124	4	0	0	4	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0006	5124	2	0	1	0	1	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0007	5124	2	2	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0008	5124	2	0	0	0	2	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0009	5124	2	2	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0010	5124	2	1	1	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0011	5124	2	0	2	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0012	5124	2	0	0	2	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0013	5124	2	2	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0014	5124	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0015	5124	1	1	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0016	5124	1	1	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0017	5124	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0018	5124	1	1	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0019	5124	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664