JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SETD1A_chr16_30952754_30989664	0/0	c0020	5124	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0021	5124	1	0	0	0	0	1	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0022	5124	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0023	5124	1	1	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0024	5124	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0025	5124	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0026	5124	1	1	0	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0027	5124	1	0	1	0	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1A_chr16_30952754_30989664	0/0	c0028	5124	1	0	0	1	0	0	copy fasta	SETD1A	chr16	30952754	30989664
SETD1B_chr12_121799009_121837656	0/0	c0001	5901	73	23	12	25	3	10	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/1	c0002	5901	60	0	18	21	8	12	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	1/0	c0003	5901	42	28	6	0	3	4	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0004	5902	9	4	1	3	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0005	5901	5	3	2	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0006	5902	5	0	1	3	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0007	5902	4	0	0	2	0	2	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0008	5902	3	1	2	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0009	5901	3	1	0	2	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0010	5901	3	3	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0011	5901	2	0	0	1	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0012	5901	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0013	5902	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0014	5903	2	1	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0015	5901	2	0	2	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0016	5901	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0017	5901	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0018	5901	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0019	5901	2	1	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0020	5902	2	0	0	2	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0021	5902	2	2	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0022	5901	2	0	0	2	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0023	5901	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0024	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0025	5901	1	0	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0026	5901	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0027	5903	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0028	5901	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0029	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0030	5901	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0031	5901	1	0	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0032	5902	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0033	5901	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0034	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0035	5902	1	0	0	0	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0036	5903	1	0	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0037	5901	1	0	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0038	5901	1	0	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0039	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0040	5901	1	0	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0041	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656