JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SETD1B_chr12_121799009_121837656	0/0	c0042	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0043	5901	1	0	1	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0044	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0045	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0046	5901	1	1	0	0	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0047	5901	1	0	0	0	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0048	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0049	5901	1	0	0	0	0	1	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0050	5902	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0051	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0052	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD1B_chr12_121799009_121837656	0/0	c0053	5901	1	0	0	1	0	0	copy fasta	SETD1B	chr12	121799009	121837656
SETD2_chr3_47011436_47169113	0/1	c0001	7695	104	13	23	50	5	12	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	1/0	c0002	7695	103	14	21	47	5	15	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0003	7695	25	0	5	18	1	1	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0004	7695	23	23	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0005	7695	21	20	1	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0006	7695	4	4	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0007	7695	4	2	2	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0008	7695	3	0	0	3	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0009	7695	2	2	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0010	7695	1	0	1	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0011	7695	1	0	1	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0012	7695	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0013	7695	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0014	7695	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0015	7695	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0016	7695	1	0	0	0	0	1	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0017	7695	1	0	0	1	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0018	7695	1	0	0	1	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0019	7695	1	0	1	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0020	7695	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0021	7695	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0022	7695	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0023	7695	1	0	0	0	1	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0024	7695	1	0	0	0	0	1	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0025	7695	1	0	1	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0026	7695	1	0	0	0	0	1	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0027	7695	1	1	0	0	0	0	copy fasta	SETD2	chr3	47011436	47169113
SETD2_chr3_47011436_47169113	0/0	c0028	7695	1	0	0	0	0	1	copy fasta	SETD2	chr3	47011436	47169113
SETD3_chr14_99392748_99485859	1/1	c0001	1785	268	56	46	122	12	30	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	c0002	1785	10	10	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	c0003	1785	4	4	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	c0004	1785	2	2	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	c0005	1785	1	1	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	c0006	1785	1	1	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	c0007	1785	1	1	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	c0008	1785	1	0	0	1	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	c0009	1785	1	0	0	1	0	0	copy fasta	SETD3	chr14	99392748	99485859
SETD3_chr14_99392748_99485859	0/0	c0010	1785	1	1	0	0	0	0	copy fasta	SETD3	chr14	99392748	99485859