JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SETD4_chr21_36029541_36065526	1/1	c0001	1323	311	90	55	117	14	33	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	c0002	1323	71	1	8	53	0	9	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	c0003	1323	7	0	0	7	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	c0004	1323	4	0	1	0	2	1	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	c0005	1323	1	0	1	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	c0006	1323	1	1	0	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	c0007	1323	1	0	0	0	0	1	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	c0008	1323	1	0	1	0	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD4_chr21_36029541_36065526	0/0	c0009	1323	1	0	0	1	0	0	copy fasta	SETD4	chr21	36029541	36065526
SETD5_chr3_9392615_9483154	1/1	c0001	4329	203	67	39	71	11	13	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0002	4329	11	2	4	0	0	5	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0003	4329	9	8	1	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0004	4329	4	0	0	4	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0005	4329	3	0	3	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0006	4329	2	2	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0007	4329	2	0	0	2	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0008	4329	2	2	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0009	4329	1	0	0	0	1	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0010	4329	1	0	1	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0011	4329	1	0	0	1	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD5_chr3_9392615_9483154	0/0	c0012	4329	1	1	0	0	0	0	copy fasta	SETD5	chr3	9392615	9483154
SETD6_chr16_58510517_58528842	0/0	c0001	1422	294	60	28	160	11	35	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	1/1	c0002	1422	69	22	26	6	5	8	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	c0003	1422	56	5	11	33	2	5	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	c0004	1422	2	2	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	c0005	1422	1	1	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	c0006	1422	1	1	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	c0007	1422	1	0	0	1	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	c0008	1422	1	0	1	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD6_chr16_58510517_58528842	0/0	c0009	1422	1	1	0	0	0	0	copy fasta	SETD6	chr16	58510517	58528842
SETD7_chr4_139501038_139561219	1/0	c0001	1101	298	89	57	99	17	35	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	c0002	1101	8	1	3	4	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/1	c0003	1101	3	1	0	0	1	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	c0004	1101	3	3	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	c0005	1101	2	2	0	0	0	0	copy fasta	SETD7	chr4	139501038	139561219
SETD7_chr4_139501038_139561219	0/0	c0006	1101	2	0	0	1	0	1	copy fasta	SETD7	chr4	139501038	139561219
SETD9_chr5_56904596_56922348	1/0	c0001	900	235	44	31	132	4	23	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	c0002	900	140	27	30	58	6	19	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/1	c0003	900	42	9	17	9	2	4	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	c0004	900	4	0	0	4	0	0	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	c0005	900	2	2	0	0	0	0	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	c0006	900	1	1	0	0	0	0	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	c0007	900	1	0	0	1	0	0	copy fasta	SETD9	chr5	56904596	56922348
SETD9_chr5_56904596_56922348	0/0	c0008	900	1	1	0	0	0	0	copy fasta	SETD9	chr5	56904596	56922348
SETDB1_chr1_150921363_150969737	1/0	c0001	3879	321	78	53	136	17	36	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0002	3879	5	4	0	0	0	1	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0003	3879	4	0	0	0	0	4	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/1	c0004	3879	3	0	2	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0005	3879	2	0	0	2	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0006	3879	2	0	0	2	0	0	copy fasta	SETDB1	chr1	150921363	150969737