JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SETDB1_chr1_150921363_150969737	0/0	c0007	3879	1	0	0	0	1	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0008	3879	1	1	0	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0009	3879	1	1	0	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0010	3879	1	0	0	1	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0011	3879	1	0	0	1	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0012	3879	1	0	1	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0013	3879	1	0	0	0	0	1	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0014	3879	1	1	0	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0015	3879	1	0	0	1	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0016	3879	1	0	1	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0017	3879	1	0	1	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0018	3879	1	1	0	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0019	3879	1	0	0	1	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0020	3879	1	1	0	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB1_chr1_150921363_150969737	0/0	c0021	3879	1	1	0	0	0	0	copy fasta	SETDB1	chr1	150921363	150969737
SETDB2_chr13_49439274_49500003	0/1	c0001	2124	169	35	29	87	7	10	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0002	2124	115	17	19	72	1	6	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	1/0	c0003	2124	59	4	19	22	4	9	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0004	2124	34	16	3	9	0	6	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0005	2124	14	13	1	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0006	2124	5	0	5	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0007	2124	2	0	2	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0008	2124	2	2	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0009	2124	1	1	0	0	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0010	2124	1	0	0	0	0	1	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0011	2111	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0012	2124	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0013	2124	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETDB2_chr13_49439274_49500003	0/0	c0014	2124	1	0	0	1	0	0	copy fasta	SETDB2	chr13	49439274	49500003
SETMAR_chr3_4298369_4322265	1/0	c0001	2055	302	14	62	186	8	31	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0002	2055	55	13	6	24	4	8	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0003	2055	47	35	5	0	3	4	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0004	2055	10	10	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0005	2055	4	4	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0006	2055	4	3	1	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0007	2055	3	0	0	3	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0008	2055	3	3	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0009	2055	2	0	2	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0010	2055	2	2	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0011	2055	2	2	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0012	2055	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0013	2055	1	0	0	0	1	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0014	2055	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0015	2055	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0016	2055	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0017	2055	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/1	c0018	2055	1	0	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0019	2055	1	1	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0020	2055	1	1	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0021	2055	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265