JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SETMAR_chr3_4298369_4322265	0/0	c0022	2055	1	0	0	0	0	1	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0023	2055	1	0	0	1	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0024	2055	1	1	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETMAR_chr3_4298369_4322265	0/0	c0025	2055	1	1	0	0	0	0	copy fasta	SETMAR	chr3	4298369	4322265
SETSIP_chr1_92069533_92080411	1/0	c0001	879	319	80	61	127	14	36	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0002	880	14	3	5	5	0	1	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0003	879	13	0	0	13	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0004	880	3	0	0	3	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0005	882	3	3	0	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0006	879	3	0	0	1	0	2	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0007	879	2	2	0	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0008	879	1	1	0	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0009	879	1	0	1	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0010	879	1	0	0	0	0	1	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0011	879	1	1	0	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0012	879	1	0	0	1	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETSIP_chr1_92069533_92080411	0/0	c0013	879	1	0	1	0	0	0	copy fasta	SETSIP	chr1	92069533	92080411
SETX_chr9_132256356_132359986	0/1	c0001	8034	86	10	20	31	6	18	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0002	8034	46	6	4	32	2	2	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0003	8034	36	5	0	28	1	2	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0004	8034	35	0	4	29	0	2	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0005	8034	27	3	5	12	2	5	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0006	8034	18	10	4	2	2	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0007	8034	18	18	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0008	8034	7	0	0	7	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0009	8034	7	7	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0010	8034	6	0	2	4	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0011	8034	4	3	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0012	8034	4	1	1	0	0	2	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0013	8034	3	3	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0014	8034	3	0	0	2	0	1	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0015	8034	3	3	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0016	8034	2	0	0	2	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0017	8034	2	0	1	0	1	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0018	8034	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0019	8034	2	1	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0020	8034	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0021	8034	2	0	0	2	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0022	8034	2	0	0	2	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0023	8034	2	0	0	1	0	1	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0024	8034	2	0	0	2	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0025	8034	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0026	8034	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0027	8034	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0028	8034	2	2	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0029	8034	2	0	0	0	0	2	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0030	8034	1	0	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0031	8034	1	0	0	0	0	1	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0032	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0033	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986