JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SETX_chr9_132256356_132359986	0/0	c0034	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0035	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0036	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0037	8034	1	0	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0038	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0039	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0040	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0041	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0042	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0043	8034	1	0	1	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0044	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0045	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0046	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0047	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0048	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	1/0	c0049	8034	1	0	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0050	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0051	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0052	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0053	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0054	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0055	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0056	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0057	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0058	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0059	8034	1	1	0	0	0	0	copy fasta	SETX	chr9	132256356	132359986
SETX_chr9_132256356_132359986	0/0	c0060	8034	1	0	0	1	0	0	copy fasta	SETX	chr9	132256356	132359986
SET_chr9_128684222_128701396	1/1	c0001	834	390	87	67	185	12	37	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	c0002	834	2	0	1	1	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	c0003	834	1	1	0	0	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	c0004	834	1	0	0	0	0	1	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	c0005	834	1	0	0	1	0	0	copy fasta	SET	chr9	128684222	128701396
SET_chr9_128684222_128701396	0/0	c0006	834	1	0	0	1	0	0	copy fasta	SET	chr9	128684222	128701396
SEZ6L2_chr16_29866159_29904550	0/1	c0001	2772	179	74	34	45	7	18	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	1/0	c0002	2772	66	0	8	43	1	13	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0003	2772	45	0	1	44	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0004	2772	4	3	1	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0005	2772	2	0	0	2	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0006	2772	2	0	0	2	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0007	2772	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0008	2772	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0009	2772	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0010	2772	1	0	0	1	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0011	2772	1	0	1	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0012	2772	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0013	2772	1	0	0	0	0	1	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0014	2772	1	0	1	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0015	2772	1	0	0	1	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L2_chr16_29866159_29904550	0/0	c0016	2772	1	1	0	0	0	0	copy fasta	SEZ6L2	chr16	29866159	29904550
SEZ6L_chr22_26164462_26388596	1/0	c0001	3075	91	5	28	40	4	13	copy fasta	SEZ6L	chr22	26164462	26388596