JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEZ6L_chr22_26164462_26388596	0/0	c0002	3075	28	17	9	0	2	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0003	3075	23	12	6	3	0	2	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0004	3075	15	14	0	0	0	1	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0005	3075	12	5	1	6	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0006	3075	11	10	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0007	3075	6	1	4	0	1	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0008	3075	5	3	0	2	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/1	c0009	3075	5	0	3	0	1	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0010	3075	4	0	1	0	2	1	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0011	3075	4	4	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0012	3075	4	4	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0013	3075	2	0	1	0	1	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0014	3075	2	0	2	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0015	3075	2	0	0	0	0	2	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0016	3075	2	0	0	0	0	2	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0017	3075	2	0	2	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0018	3075	2	2	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0019	3075	2	0	0	0	0	2	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0020	3075	1	0	0	1	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0021	3075	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0022	3075	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0023	3075	1	0	0	0	0	1	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0024	3075	1	0	0	1	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0025	3075	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0026	3075	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0027	3075	1	0	0	1	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0028	3075	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0029	3075	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0030	3075	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0031	3075	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0032	3075	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0033	3075	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0034	3075	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0035	3075	1	0	0	0	1	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0036	3075	1	0	1	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6L_chr22_26164462_26388596	0/0	c0037	3075	1	1	0	0	0	0	copy fasta	SEZ6L	chr22	26164462	26388596
SEZ6_chr17_28949905_29011033	1/0	c0001	2985	152	35	31	62	6	17	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/1	c0002	2985	52	8	9	21	1	12	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0003	2985	40	19	7	11	2	1	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0004	2985	17	3	2	10	0	2	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0005	2985	7	6	1	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0006	2985	4	0	0	4	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0007	2985	3	3	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0008	2985	3	0	0	0	0	3	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0009	2985	3	1	0	1	0	1	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0010	2985	3	3	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0011	2985	2	2	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0012	2985	2	2	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0013	2985	2	2	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0014	2985	2	0	2	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033