JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SEZ6_chr17_28949905_29011033	0/0	c0015	2985	2	2	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0016	2985	1	0	1	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0017	2985	1	0	0	0	1	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0018	2985	1	1	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0019	2985	1	0	0	1	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0020	2985	1	1	0	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SEZ6_chr17_28949905_29011033	0/0	c0021	2985	1	0	1	0	0	0	copy fasta	SEZ6	chr17	28949905	29011033
SF1_chr11_64759606_64783542	1/1	c0001	1920	334	85	54	149	12	32	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	c0002	1920	3	3	0	0	0	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	c0003	1920	2	0	0	2	0	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	c0004	1920	1	0	0	1	0	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	c0005	1920	1	1	0	0	0	0	copy fasta	SF1	chr11	64759606	64783542
SF1_chr11_64759606_64783542	0/0	c0006	1920	1	1	0	0	0	0	copy fasta	SF1	chr11	64759606	64783542
SF3A1_chr22_30326988_30361894	1/1	c0001	2382	349	82	65	146	15	39	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	c0002	2382	44	10	10	19	3	2	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	c0003	2382	3	0	3	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	c0004	2382	2	0	0	2	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	c0005	2382	1	0	0	0	0	1	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	c0006	2382	1	0	1	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	c0007	2382	1	0	1	0	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A1_chr22_30326988_30361894	0/0	c0008	2382	1	0	0	1	0	0	copy fasta	SF3A1	chr22	30326988	30361894
SF3A2_chr19_2231824_2253655	1/1	c0001	1395	330	75	53	146	17	37	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0002	1395	50	14	8	24	0	4	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0003	1416	18	2	10	2	0	4	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0004	1374	10	1	8	0	0	1	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0005	1395	2	0	0	2	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0006	1395	1	0	0	1	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0007	1395	1	0	0	1	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0008	1395	1	1	0	0	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0009	1395	1	1	0	0	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0010	1374	1	0	0	1	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0011	1416	1	0	1	0	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0012	1395	1	0	0	1	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0013	1395	1	1	0	0	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0014	1395	1	0	0	0	1	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A2_chr19_2231824_2253655	0/0	c0015	1395	1	1	0	0	0	0	copy fasta	SF3A2	chr19	2231824	2253655
SF3A3_chr1_37951975_37995022	1/0	c0001	1506	288	69	48	136	9	25	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/1	c0002	1506	106	21	22	44	5	13	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	c0003	1506	4	4	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3A3_chr1_37951975_37995022	0/0	c0004	1506	2	2	0	0	0	0	copy fasta	SF3A3	chr1	37951975	37995022
SF3B1_chr2_197384784_197440028	0/1	c0001	3915	224	62	39	95	7	20	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	1/0	c0002	3915	99	9	26	52	3	8	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	c0003	3915	4	4	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	c0004	3915	3	3	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	c0005	3915	2	1	0	1	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	c0006	3915	2	0	0	2	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	c0007	3915	2	2	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	c0008	3915	2	1	0	1	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	c0009	3915	2	0	0	0	0	2	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	c0010	3915	1	1	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028