JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SF3B1_chr2_197384784_197440028	0/0	c0011	3915	1	1	0	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	c0012	3915	1	0	0	1	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B1_chr2_197384784_197440028	0/0	c0013	3915	1	0	1	0	0	0	copy fasta	SF3B1	chr2	197384784	197440028
SF3B2_chr11_66047364_66074308	1/1	c0001	2688	278	73	45	124	12	22	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	c0002	2688	93	18	19	47	4	5	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	c0003	2691	18	0	0	16	0	2	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	c0004	2688	1	0	0	1	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	c0005	2688	1	1	0	0	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	c0006	2688	1	0	0	0	0	1	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	c0007	2688	1	0	0	1	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B2_chr11_66047364_66074308	0/0	c0008	2688	1	0	0	1	0	0	copy fasta	SF3B2	chr11	66047364	66074308
SF3B3_chr16_70518816_70582668	1/1	c0001	3654	170	46	26	78	6	12	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	c0002	3654	152	15	31	80	6	20	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	c0003	3654	10	9	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	c0004	3654	2	0	0	2	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	c0005	3654	2	0	0	2	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	c0006	3654	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	c0007	3654	1	0	1	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	c0008	3654	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	c0009	3654	1	1	0	0	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	c0010	3654	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B3_chr16_70518816_70582668	0/0	c0011	3654	1	0	0	1	0	0	copy fasta	SF3B3	chr16	70518816	70582668
SF3B4_chr1_149918317_149932803	1/1	c0001	1275	341	90	61	139	13	36	copy fasta	SF3B4	chr1	149918317	149932803
SF3B4_chr1_149918317_149932803	0/0	c0002	1275	7	0	0	7	0	0	copy fasta	SF3B4	chr1	149918317	149932803
SF3B4_chr1_149918317_149932803	0/0	c0003	1275	2	0	1	0	1	0	copy fasta	SF3B4	chr1	149918317	149932803
SF3B5_chr6_144089884_144100573	1/1	c0001	261	441	95	86	204	12	42	copy fasta	SF3B5	chr6	144089884	144100573
SF3B5_chr6_144089884_144100573	0/0	c0002	261	1	1	0	0	0	0	copy fasta	SF3B5	chr6	144089884	144100573
SF3B6_chr2_24062586_24081326	1/1	c0001	378	343	92	61	133	16	39	copy fasta	SF3B6	chr2	24062586	24081326
SF3B6_chr2_24062586_24081326	0/0	c0002	378	7	0	3	1	2	1	copy fasta	SF3B6	chr2	24062586	24081326
SFI1_chr22_31491536_31623588	0/0	c0001	3729	86	1	21	52	8	4	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/1	c0002	3729	79	14	3	51	1	9	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0003	3729	49	16	7	10	5	11	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0004	3729	14	4	4	2	0	4	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0005	3729	12	0	4	8	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0006	3729	9	4	4	0	0	1	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0007	3729	7	7	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0008	3729	7	2	2	0	0	3	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0009	3729	5	5	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0010	3729	4	2	0	0	2	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0011	3729	4	0	4	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0012	3726	3	3	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0013	3729	2	2	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0014	3729	2	0	0	0	0	2	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0015	3729	2	2	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0016	3729	2	2	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0017	3729	2	2	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0018	3729	2	2	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0019	3729	2	0	2	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0020	3729	2	0	1	1	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0021	3729	2	2	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588