JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP11A_chr13_112685038_112892168	0/0	c0016	3405	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0017	3405	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0018	3405	2	0	0	0	0	2	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0019	3405	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0020	3405	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0021	3405	2	2	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0022	3405	2	1	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0023	3405	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0024	3405	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0025	3405	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0026	3405	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0027	3405	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/1	c0028	3405	1	0	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0029	3405	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0030	3405	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0031	3405	1	0	0	0	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0032	3405	1	0	0	0	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0033	3405	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0034	3405	1	0	1	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0035	3405	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0036	3405	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0037	3405	1	0	0	0	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0038	3405	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0039	3405	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0040	3405	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0041	3405	1	0	0	0	0	1	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0042	3405	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0043	3405	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0044	3405	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0045	3405	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0046	3405	1	1	0	0	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0047	3405	1	0	0	1	0	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11A_chr13_112685038_112892168	0/0	c0048	3405	1	0	0	0	1	0	copy fasta	ATP11A	chr13	112685038	112892168
ATP11B_chr3_182788504_182926629	1/1	c0001	3534	259	49	41	141	8	18	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	c0002	3534	50	27	8	8	5	2	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	c0003	3534	4	4	0	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	c0004	3534	3	2	1	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	c0005	3534	3	0	0	3	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	c0006	3534	2	0	1	0	1	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	c0007	3534	1	0	0	1	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	c0008	3534	1	0	0	1	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11B_chr3_182788504_182926629	0/0	c0009	3534	1	0	1	0	0	0	copy fasta	ATP11B	chr3	182788504	182926629
ATP11C_chrX_139721348_139938053	0/1	c0001	3390	188	53	33	76	7	18	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	c0002	3390	21	0	5	16	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	c0003	3390	10	0	2	8	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	c0004	3390	10	8	2	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	1/0	c0005	3390	2	0	1	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	c0006	3389	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	c0007	3391	1	0	0	1	0	0	copy fasta	ATP11C	chrX	139721348	139938053
ATP11C_chrX_139721348_139938053	0/0	c0008	3390	1	1	0	0	0	0	copy fasta	ATP11C	chrX	139721348	139938053