JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SFI1_chr22_31491536_31623588	0/0	c0022	3729	2	0	0	1	0	1	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0023	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0024	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0025	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0026	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0027	3729	1	0	0	0	0	1	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0028	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0029	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0030	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0031	3729	1	0	0	0	0	1	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0032	3729	1	0	0	1	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0033	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0034	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0035	3729	1	0	0	1	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0036	3729	1	0	0	1	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0037	3729	1	0	1	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0038	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	1/0	c0039	3729	1	0	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0040	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0041	3729	1	0	0	0	0	1	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0042	3729	1	0	0	1	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0043	3729	1	0	1	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0044	3729	1	1	0	0	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFI1_chr22_31491536_31623588	0/0	c0045	3729	1	0	0	1	0	0	copy fasta	SFI1	chr22	31491536	31623588
SFMBT1_chr3_52898572_53051073	1/1	c0001	2601	309	72	61	124	10	40	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	c0002	2601	5	4	1	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	c0003	2601	5	0	4	1	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	c0004	2601	3	3	0	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	c0005	2601	1	1	0	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	c0006	2601	1	0	0	1	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	c0007	2601	1	1	0	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	c0008	2601	1	0	0	1	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	c0009	2601	1	0	0	1	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT1_chr3_52898572_53051073	0/0	c0010	2601	1	1	0	0	0	0	copy fasta	SFMBT1	chr3	52898572	53051073
SFMBT2_chr10_7153624_7416034	0/1	c0001	2685	109	53	30	9	1	15	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	1/0	c0002	2685	17	12	2	0	1	1	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	c0003	2685	7	7	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	c0004	2685	2	2	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	c0005	2685	2	1	1	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	c0006	2685	2	2	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	c0007	2685	1	0	1	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	c0008	2685	1	0	0	1	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	c0009	2685	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	c0010	2685	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFMBT2_chr10_7153624_7416034	0/0	c0011	2685	1	1	0	0	0	0	copy fasta	SFMBT2	chr10	7153624	7416034
SFN_chr1_26858149_26869456	1/1	c0001	747	327	88	71	110	14	42	copy fasta	SFN	chr1	26858149	26869456
SFN_chr1_26858149_26869456	0/0	c0002	747	5	0	3	0	2	0	copy fasta	SFN	chr1	26858149	26869456
SFPQ_chr1_35177936_35198145	0/0	c0001	2124	222	54	26	134	3	5	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	1/1	c0002	2124	132	26	26	45	9	24	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0003	2124	10	9	1	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145