JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SFPQ_chr1_35177936_35198145	0/0	c0004	2124	4	1	0	2	0	1	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0005	2124	2	0	0	0	0	2	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0006	2124	2	0	0	2	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0007	2124	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0008	2124	1	1	0	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0009	2124	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0010	2124	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0011	2124	1	1	0	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0012	2124	1	0	1	0	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0013	2124	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFPQ_chr1_35177936_35198145	0/0	c0014	2109	1	0	0	1	0	0	copy fasta	SFPQ	chr1	35177936	35198145
SFR1_chr10_104117171_104131383	1/1	c0001	738	314	51	66	140	14	41	copy fasta	SFR1	chr10	104117171	104131383
SFR1_chr10_104117171_104131383	0/0	c0002	738	107	36	8	56	2	5	copy fasta	SFR1	chr10	104117171	104131383
SFR1_chr10_104117171_104131383	0/0	c0003	738	4	2	2	0	0	0	copy fasta	SFR1	chr10	104117171	104131383
SFR1_chr10_104117171_104131383	0/0	c0004	738	1	1	0	0	0	0	copy fasta	SFR1	chr10	104117171	104131383
SFRP1_chr8_41256962_41314473	1/1	c0001	945	259	86	45	90	10	26	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	c0002	942	118	5	33	58	4	18	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	c0003	945	3	0	2	1	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	c0004	945	1	1	0	0	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	c0005	945	1	0	0	1	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	c0006	942	1	0	0	1	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP1_chr8_41256962_41314473	0/0	c0007	942	1	0	0	1	0	0	copy fasta	SFRP1	chr8	41256962	41314473
SFRP2_chr4_153775591_153794083	0/1	c0001	888	356	42	56	208	8	41	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	c0002	888	53	29	8	3	7	6	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	c0003	888	12	9	2	0	1	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	1/0	c0004	888	6	5	0	0	0	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	c0005	888	2	0	0	2	0	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	c0006	888	2	2	0	0	0	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	c0007	888	1	1	0	0	0	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	c0008	888	1	0	0	0	0	1	copy fasta	SFRP2	chr4	153775591	153794083
SFRP2_chr4_153775591_153794083	0/0	c0009	888	1	0	0	1	0	0	copy fasta	SFRP2	chr4	153775591	153794083
SFRP4_chr7_37900932_37921817	0/1	c0001	1041	158	16	25	89	5	22	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0002	1041	122	24	21	59	2	16	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0003	1041	77	17	26	25	6	3	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0004	1041	47	14	3	22	1	7	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0005	1041	33	1	0	29	1	2	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0006	1041	17	16	1	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0007	1041	4	4	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0008	1041	3	0	3	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	1/0	c0009	1041	3	2	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0010	1041	3	1	2	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0011	1041	3	3	0	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0012	1041	1	0	0	0	1	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP4_chr7_37900932_37921817	0/0	c0013	1041	1	0	1	0	0	0	copy fasta	SFRP4	chr7	37900932	37921817
SFRP5_chr10_97761751_97776999	0/1	c0001	954	254	89	43	85	8	28	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	1/0	c0002	954	118	2	22	79	4	10	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	c0003	954	1	0	0	1	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	c0004	954	1	0	0	1	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	c0005	954	1	1	0	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	c0006	954	1	1	0	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999