JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SFRP5_chr10_97761751_97776999	0/0	c0007	954	1	1	0	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	c0008	954	1	0	0	1	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	c0009	954	1	0	1	0	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFRP5_chr10_97761751_97776999	0/0	c0010	954	1	0	0	1	0	0	copy fasta	SFRP5	chr10	97761751	97776999
SFSWAP_chr12_131706090_131804738	0/1	c0001	2856	241	52	51	103	8	26	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0002	2856	19	1	13	0	2	3	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0003	2856	14	10	1	1	2	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0004	2856	6	6	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0005	2857	4	1	1	2	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0006	2856	3	3	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0007	2856	2	0	2	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0008	2856	2	0	2	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0009	2856	2	2	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0010	2856	2	0	1	1	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0011	2856	2	2	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0012	2856	2	2	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0013	2856	1	0	0	1	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0014	2856	1	0	0	0	0	1	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0015	2856	1	1	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0016	2856	1	0	1	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0017	2856	1	1	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0018	2856	1	1	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0019	2856	1	0	0	0	0	1	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0020	2856	1	0	0	1	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0021	2856	1	1	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0022	2856	1	0	0	0	0	1	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0023	2857	1	1	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0024	2856	1	0	0	1	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0025	2856	1	0	0	0	0	1	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	1/0	c0026	2856	1	0	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0027	2856	1	1	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0028	2856	1	0	0	0	0	1	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0029	2856	1	0	0	0	0	1	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0030	2856	1	0	0	0	0	1	copy fasta	SFSWAP	chr12	131706090	131804738
SFSWAP_chr12_131706090_131804738	0/0	c0031	2856	1	1	0	0	0	0	copy fasta	SFSWAP	chr12	131706090	131804738
SFT2D1_chr6_166314728_166347545	0/0	c0001	480	176	31	35	77	8	25	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D1_chr6_166314728_166347545	1/1	c0002	480	131	60	30	14	7	18	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D1_chr6_166314728_166347545	0/0	c0003	480	78	1	11	62	1	3	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D1_chr6_166314728_166347545	0/0	c0004	480	2	0	0	2	0	0	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D1_chr6_166314728_166347545	0/0	c0005	480	1	0	0	1	0	0	copy fasta	SFT2D1	chr6	166314728	166347545
SFT2D2_chr1_168221004_168258021	1/1	c0001	483	345	86	52	157	10	38	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	c0002	483	4	0	0	4	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	c0003	483	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	c0004	483	1	0	0	1	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D2_chr1_168221004_168258021	0/0	c0005	483	1	1	0	0	0	0	copy fasta	SFT2D2	chr1	168221004	168258021
SFT2D3_chr2_127696497_127710242	1/1	c0001	648	202	40	48	89	8	15	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0002	648	148	52	24	49	6	17	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0003	648	14	0	3	7	0	4	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0004	648	4	2	1	0	1	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0005	666	4	0	0	3	1	0	copy fasta	SFT2D3	chr2	127696497	127710242