JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SFT2D3_chr2_127696497_127710242	0/0	c0006	648	3	3	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0007	636	2	0	0	0	2	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0008	648	2	0	0	2	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0009	648	2	0	0	2	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0010	648	1	0	0	1	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0011	648	1	0	0	1	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0012	648	1	0	0	1	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0013	648	1	0	0	1	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFT2D3_chr2_127696497_127710242	0/0	c0014	648	1	1	0	0	0	0	copy fasta	SFT2D3	chr2	127696497	127710242
SFTA2_chr6_30926353_30937170	0/0	c0001	237	271	68	51	121	7	24	copy fasta	SFTA2	chr6	30926353	30937170
SFTA2_chr6_30926353_30937170	0/1	c0002	237	140	15	21	79	7	17	copy fasta	SFTA2	chr6	30926353	30937170
SFTA2_chr6_30926353_30937170	0/0	c0003	237	24	7	6	2	2	7	copy fasta	SFTA2	chr6	30926353	30937170
SFTPA1_chr10_79605939_79620443	0/1	c0001	747	174	42	38	63	12	18	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0002	747	78	12	6	46	1	13	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0003	747	67	7	7	51	2	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0004	747	65	3	9	48	0	5	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0005	747	28	1	13	8	0	6	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	1/0	c0006	747	28	14	10	0	1	2	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0007	747	8	8	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0008	747	5	0	0	5	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0009	747	2	0	0	2	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0010	747	2	2	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0011	747	2	1	1	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0012	747	1	0	1	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0013	747	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0014	747	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0015	747	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0016	747	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0017	747	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0018	747	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0019	747	1	0	1	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0020	727	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0021	747	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0022	747	1	0	0	1	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0023	747	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA1_chr10_79605939_79620443	0/0	c0024	747	1	1	0	0	0	0	copy fasta	SFTPA1	chr10	79605939	79620443
SFTPA2_chr10_79550852_79565407	0/1	c0001	747	202	29	48	91	9	24	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0002	747	96	23	7	49	1	16	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0003	747	43	3	3	35	2	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0004	747	36	4	11	16	0	5	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	1/0	c0005	747	27	10	8	8	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0006	747	11	0	0	11	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0007	747	7	4	2	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0008	747	7	7	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0009	747	7	7	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0010	747	6	0	0	6	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0011	747	6	0	4	0	0	2	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0012	747	3	3	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0013	747	3	0	0	3	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0014	747	2	0	1	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407