JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SFTPA2_chr10_79550852_79565407	0/0	c0015	747	2	2	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0016	747	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0017	747	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0018	747	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0019	747	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0020	747	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0021	747	1	1	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0022	747	1	0	0	0	0	1	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0023	747	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0024	747	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0025	747	1	1	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0026	747	1	1	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0027	747	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0028	747	1	1	0	0	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPA2_chr10_79550852_79565407	0/0	c0029	747	1	0	0	1	0	0	copy fasta	SFTPA2	chr10	79550852	79565407
SFTPB_chr2_85652314_85673199	1/1	c0001	1146	228	13	42	139	7	25	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0002	1146	130	37	25	41	5	22	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0003	1146	30	28	2	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0004	1146	8	0	7	1	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0005	1146	7	7	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0006	1146	5	3	2	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0007	1146	3	3	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0008	1146	2	0	0	2	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0009	1146	2	2	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0010	1146	2	2	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0011	1146	2	2	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0012	1146	1	1	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0013	1146	1	1	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0014	1146	1	0	0	1	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0015	1146	1	0	0	1	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0016	1146	1	0	0	0	0	1	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0017	1146	1	0	0	1	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPB_chr2_85652314_85673199	0/0	c0018	1146	1	1	0	0	0	0	copy fasta	SFTPB	chr2	85652314	85673199
SFTPC_chr8_22156798_22169479	1/1	c0001	576	348	81	64	153	15	33	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0002	576	78	4	17	44	0	13	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0003	576	21	5	2	11	1	2	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0004	576	6	6	0	0	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0005	576	3	0	0	3	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0006	576	3	0	0	3	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0007	576	2	2	0	0	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0008	576	1	0	0	1	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0009	576	1	0	0	1	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0010	576	1	0	0	1	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0011	576	1	0	1	0	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPC_chr8_22156798_22169479	0/0	c0012	576	1	0	0	1	0	0	copy fasta	SFTPC	chr8	22156798	22169479
SFTPD_chr10_79932740_79954105	0/1	c0001	1128	182	24	14	116	3	24	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	1/0	c0002	1128	82	1	19	49	5	7	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0003	1128	80	31	19	27	2	1	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0004	1128	30	3	13	8	0	6	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0005	1128	11	6	5	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105