JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SFTPD_chr10_79932740_79954105	0/0	c0006	1128	9	9	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0007	1128	7	2	4	0	0	1	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0008	1128	6	6	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0009	1128	4	1	2	0	1	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0010	1128	2	0	1	0	1	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0011	1128	2	2	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0012	1128	1	0	0	1	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0013	1128	1	1	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0014	1128	1	0	0	0	0	1	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0015	1128	1	1	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0016	1128	1	0	1	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0017	1128	1	1	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0018	1128	1	1	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0019	1128	1	1	0	0	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFTPD_chr10_79932740_79954105	0/0	c0020	1128	1	0	0	1	0	0	copy fasta	SFTPD	chr10	79932740	79954105
SFXN1_chr5_175473560_175534742	1/1	c0001	969	244	47	52	109	11	23	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0002	969	105	39	12	33	3	18	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0003	969	12	0	5	3	0	4	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0004	969	2	2	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0005	969	2	2	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0006	969	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0007	969	1	1	0	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0008	969	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0009	969	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0010	969	1	0	0	0	0	1	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0011	969	1	0	1	0	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN1_chr5_175473560_175534742	0/0	c0012	969	1	0	0	1	0	0	copy fasta	SFXN1	chr5	175473560	175534742
SFXN2_chr10_102709636_102748492	1/1	c0001	969	380	78	77	179	10	34	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	c0002	969	7	6	1	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	c0003	969	4	4	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	c0004	969	4	4	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	c0005	969	3	0	0	3	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	c0006	969	2	0	0	2	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	c0007	969	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	c0008	969	1	1	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	c0009	969	1	0	0	1	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN2_chr10_102709636_102748492	0/0	c0010	969	1	1	0	0	0	0	copy fasta	SFXN2	chr10	102709636	102748492
SFXN3_chr10_101026234_101046241	1/1	c0001	966	409	82	83	180	18	44	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	c0002	966	19	0	0	19	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	c0003	966	7	6	1	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	c0004	966	6	6	0	0	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	c0005	966	1	0	0	0	0	1	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	c0006	966	1	0	0	0	0	1	copy fasta	SFXN3	chr10	101026234	101046241
SFXN3_chr10_101026234_101046241	0/0	c0007	966	1	0	0	1	0	0	copy fasta	SFXN3	chr10	101026234	101046241
SFXN4_chr10_119135767_119170714	0/1	c0001	1014	226	34	46	120	9	16	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0002	1014	181	43	36	63	9	30	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	1/0	c0003	1014	10	9	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0004	1014	3	3	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0005	1014	3	2	0	0	0	1	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0006	1014	1	0	0	1	0	0	copy fasta	SFXN4	chr10	119135767	119170714