JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SFXN4_chr10_119135767_119170714	0/0	c0007	1014	1	0	0	1	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0008	1014	1	0	1	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0009	1014	1	0	0	1	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0010	1014	1	0	1	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0011	1014	1	0	0	0	0	1	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0012	1014	1	1	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0013	1014	1	1	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN4_chr10_119135767_119170714	0/0	c0014	1014	1	1	0	0	0	0	copy fasta	SFXN4	chr10	119135767	119170714
SFXN5_chr2_72937036_73076712	1/1	c0001	1023	128	46	26	29	7	18	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0002	1023	100	27	13	49	3	8	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0003	1023	7	5	2	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0004	1023	3	3	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0005	1023	2	2	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0006	1023	2	2	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0007	1023	1	0	1	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0008	1023	1	0	1	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0009	1023	1	0	1	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0010	1023	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0011	1023	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0012	1023	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0013	1023	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SFXN5_chr2_72937036_73076712	0/0	c0014	1023	1	1	0	0	0	0	copy fasta	SFXN5	chr2	72937036	73076712
SGCA_chr17_50161005_50180928	1/0	c0001	1164	369	67	79	160	16	46	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/1	c0002	1164	36	27	4	0	2	2	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	c0003	1164	4	4	0	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	c0004	1164	2	2	0	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	c0005	1164	1	0	0	1	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	c0006	1125	1	0	0	1	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	c0007	1164	1	0	1	0	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	c0008	1164	1	0	0	1	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCA_chr17_50161005_50180928	0/0	c0009	1164	1	0	0	1	0	0	copy fasta	SGCA	chr17	50161005	50180928
SGCB_chr4_52015706_52043299	0/0	c0001	957	364	82	68	157	18	39	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	c0002	957	1	1	0	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	c0003	957	1	0	0	0	0	1	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	c0004	957	1	0	0	1	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCB_chr4_52015706_52043299	0/0	c0005	957	1	1	0	0	0	0	copy fasta	SGCB	chr4	52015706	52043299
SGCD_chr5_156322164_156772788	1/0	c0001	873	81	42	18	12	1	7	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/1	c0002	873	62	20	6	30	2	3	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	c0003	873	2	1	0	0	0	1	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	c0004	873	2	2	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	c0005	873	1	0	0	0	0	1	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	c0006	873	1	1	0	0	0	0	copy fasta	SGCD	chr5	156322164	156772788
SGCD_chr5_156322164_156772788	0/0	c0007	873	1	0	0	0	1	0	copy fasta	SGCD	chr5	156322164	156772788
SGCE_chr7_94579980_94661133	1/1	c0001	1314	386	80	58	199	8	39	copy fasta	SGCE	chr7	94579980	94661133
SGCE_chr7_94579980_94661133	0/0	c0002	1314	1	0	0	1	0	0	copy fasta	SGCE	chr7	94579980	94661133
SGCE_chr7_94579980_94661133	0/0	c0003	1314	1	1	0	0	0	0	copy fasta	SGCE	chr7	94579980	94661133
SGCE_chr7_94579980_94661133	0/0	c0004	1314	1	1	0	0	0	0	copy fasta	SGCE	chr7	94579980	94661133
SGCE_chr7_94579980_94661133	0/0	c0005	1314	1	0	0	0	0	1	copy fasta	SGCE	chr7	94579980	94661133
SGCG_chr13_23175979_23330162	0/0	c0001	876	99	10	15	64	2	8	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/1	c0002	876	87	12	24	36	5	9	copy fasta	SGCG	chr13	23175979	23330162