JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SGCG_chr13_23175979_23330162	0/0	c0003	876	47	13	9	22	0	3	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0004	876	32	6	9	12	2	3	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0005	876	16	3	6	0	1	6	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0006	876	15	12	3	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0007	876	14	11	3	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	1/0	c0008	876	13	7	4	0	1	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0009	876	12	0	5	3	2	2	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0010	876	9	9	0	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0011	876	3	0	0	0	3	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0012	876	2	2	0	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0013	876	1	0	0	1	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0014	876	1	1	0	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0015	876	1	0	1	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0016	876	1	0	0	0	0	1	copy fasta	SGCG	chr13	23175979	23330162
SGCG_chr13_23175979_23330162	0/0	c0017	876	1	0	1	0	0	0	copy fasta	SGCG	chr13	23175979	23330162
SGCZ_chr8_14079845_15243431	0/0	c0001	939	96	46	28	16	0	6	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	c0002	939	5	5	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGCZ_chr8_14079845_15243431	0/0	c0003	939	1	1	0	0	0	0	copy fasta	SGCZ	chr8	14079845	15243431
SGF29_chr16_28548920_28596790	1/1	c0001	882	275	75	49	112	6	31	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	c0002	882	51	10	10	26	1	4	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	c0003	882	17	3	5	1	3	5	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	c0004	882	1	0	0	1	0	0	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	c0005	882	1	1	0	0	0	0	copy fasta	SGF29	chr16	28548920	28596790
SGF29_chr16_28548920_28596790	0/0	c0006	882	1	1	0	0	0	0	copy fasta	SGF29	chr16	28548920	28596790
SGIP1_chr1_66529153_66756139	1/1	c0001	2487	181	39	43	67	7	23	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0002	2487	67	19	12	27	3	6	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0003	2487	16	10	1	1	0	4	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0004	2487	10	0	0	10	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0005	2487	6	2	3	0	0	1	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0006	2487	5	5	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0007	2487	4	3	1	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0008	2487	2	0	0	2	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0009	2487	2	0	2	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0010	2487	2	0	0	0	0	2	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0011	2487	1	0	1	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0012	2487	1	0	1	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0013	2487	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0014	2487	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0015	2487	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0016	2487	1	1	0	0	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGIP1_chr1_66529153_66756139	0/0	c0017	2487	1	0	0	1	0	0	copy fasta	SGIP1	chr1	66529153	66756139
SGK1_chr6_134164256_134323112	1/0	c0001	1581	201	70	45	54	12	19	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/1	c0002	1581	31	4	3	18	0	5	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	c0003	1581	6	0	0	5	0	1	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	c0004	1581	2	0	0	0	0	2	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	c0005	1581	2	1	1	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	c0006	1581	2	0	2	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	c0007	1581	1	1	0	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	c0008	1581	1	1	0	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	c0009	1581	1	0	0	1	0	0	copy fasta	SGK1	chr6	134164256	134323112