JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SGK1_chr6_134164256_134323112	0/0	c0010	1581	1	1	0	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	c0011	1581	1	0	1	0	0	0	copy fasta	SGK1	chr6	134164256	134323112
SGK1_chr6_134164256_134323112	0/0	c0012	1581	1	0	0	0	0	1	copy fasta	SGK1	chr6	134164256	134323112
SGK2_chr20_43554027_43590627	1/1	c0001	1104	408	83	70	198	12	43	copy fasta	SGK2	chr20	43554027	43590627
SGK2_chr20_43554027_43590627	0/0	c0002	1104	5	3	2	0	0	0	copy fasta	SGK2	chr20	43554027	43590627
SGK2_chr20_43554027_43590627	0/0	c0003	1104	1	1	0	0	0	0	copy fasta	SGK2	chr20	43554027	43590627
SGK2_chr20_43554027_43590627	0/0	c0004	1104	1	1	0	0	0	0	copy fasta	SGK2	chr20	43554027	43590627
SGK2_chr20_43554027_43590627	0/0	c0005	1104	1	0	0	0	0	1	copy fasta	SGK2	chr20	43554027	43590627
SGK3_chr8_66707781_66867022	1/1	c0001	1491	75	38	15	15	0	5	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	c0002	1491	66	38	7	11	0	10	copy fasta	SGK3	chr8	66707781	66867022
SGK3_chr8_66707781_66867022	0/0	c0003	1491	1	0	0	0	0	1	copy fasta	SGK3	chr8	66707781	66867022
SGMS1_chr10_50300600_50628956	1/1	c0001	1242	155	43	27	63	3	17	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	c0002	1242	150	43	38	51	5	13	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	c0003	1242	4	0	0	4	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	c0004	1242	1	0	1	0	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	c0005	1242	1	0	0	1	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS1_chr10_50300600_50628956	0/0	c0006	1242	1	0	0	1	0	0	copy fasta	SGMS1	chr10	50300600	50628956
SGMS2_chr4_107819932_107920047	1/1	c0001	1098	261	79	69	66	14	31	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	c0002	1098	2	2	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	c0003	1098	2	2	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	c0004	1098	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	c0005	1098	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	c0006	1098	1	0	0	0	0	1	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	c0007	1098	1	1	0	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGMS2_chr4_107819932_107920047	0/0	c0008	1098	1	0	1	0	0	0	copy fasta	SGMS2	chr4	107819932	107920047
SGO1_chr3_20164484_20191206	1/0	c0001	1584	236	58	52	80	13	32	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/1	c0002	1584	123	15	16	78	3	10	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	c0003	1584	54	8	4	42	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	c0004	1584	7	6	1	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	c0005	1584	3	1	2	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	c0006	1584	1	0	0	0	0	1	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	c0007	1584	1	1	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	c0008	1584	1	1	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	c0009	1584	1	1	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	c0010	1584	1	0	1	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	c0011	1584	1	1	0	0	0	0	copy fasta	SGO1	chr3	20164484	20191206
SGO1_chr3_20164484_20191206	0/0	c0012	1584	1	0	0	0	0	1	copy fasta	SGO1	chr3	20164484	20191206
SGO2_chr2_200521207_200589096	0/0	c0001	3798	100	14	18	54	4	10	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0002	3798	87	15	13	48	5	6	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	1/0	c0003	3798	54	11	19	13	2	8	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0004	3798	47	8	8	19	3	9	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/1	c0005	3798	29	0	9	17	2	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0006	3798	17	7	6	0	0	4	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0007	3798	9	9	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0008	3798	9	7	2	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0009	3798	6	0	0	6	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0010	3798	5	5	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0011	3798	3	0	0	3	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0012	3798	2	0	2	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0013	3798	2	0	0	2	0	0	copy fasta	SGO2	chr2	200521207	200589096