JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SGO2_chr2_200521207_200589096	0/0	c0014	3798	2	2	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0015	3798	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0016	3798	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0017	3798	1	0	0	0	0	1	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0018	3798	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0019	3798	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0020	3798	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0021	3798	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0022	3798	1	0	1	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0023	3798	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0024	3798	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0025	3777	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGO2_chr2_200521207_200589096	0/0	c0026	3798	1	1	0	0	0	0	copy fasta	SGO2	chr2	200521207	200589096
SGPL1_chr10_70810948_70886184	0/1	c0001	1707	316	76	55	136	15	33	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0002	1707	36	2	7	25	1	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0003	1707	18	1	2	9	0	6	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0004	1707	8	1	5	0	1	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	1/0	c0005	1707	7	5	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0006	1707	7	2	4	0	0	1	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0007	1707	3	2	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0008	1707	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0009	1707	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0010	1707	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0011	1707	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0012	1707	1	0	0	0	1	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0013	1707	1	1	0	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPL1_chr10_70810948_70886184	0/0	c0014	1707	1	0	1	0	0	0	copy fasta	SGPL1	chr10	70810948	70886184
SGPP1_chr14_63679216_63733065	1/1	c0001	1326	232	55	46	92	6	31	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	c0002	1326	43	31	3	5	1	3	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	c0003	1326	4	3	1	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	c0004	1326	3	0	0	3	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	c0005	1326	2	2	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	c0006	1326	1	1	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	c0007	1326	1	1	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	c0008	1326	1	1	0	0	0	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP1_chr14_63679216_63733065	0/0	c0009	1326	1	0	0	0	1	0	copy fasta	SGPP1	chr14	63679216	63733065
SGPP2_chr2_222419543_222567621	0/1	c0001	1200	210	20	48	97	11	33	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	1/0	c0002	1200	24	20	3	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0003	1200	9	8	1	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0004	1200	6	3	1	2	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0005	1200	5	5	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0006	1200	4	0	2	0	2	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0007	1200	3	3	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0008	1200	2	0	1	1	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0009	1200	2	0	0	2	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0010	1200	2	2	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0011	1200	2	2	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0012	1200	1	0	0	0	0	1	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0013	1200	1	1	0	0	0	0	copy fasta	SGPP2	chr2	222419543	222567621
SGPP2_chr2_222419543_222567621	0/0	c0014	1200	1	0	0	0	1	0	copy fasta	SGPP2	chr2	222419543	222567621