JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP12A_chr13_24675408_24717472	1/0	c0001	3120	103	20	24	45	4	9	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0002	3120	97	14	12	60	2	9	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/1	c0003	3120	78	30	9	26	3	9	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0004	3120	22	0	5	9	1	7	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0005	3120	19	7	7	3	1	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0006	3120	12	8	2	0	1	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0007	3120	8	5	0	3	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0008	3120	6	0	1	1	1	3	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0009	3120	5	1	3	0	0	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0010	3120	3	3	0	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0011	3120	3	0	2	1	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0012	3120	2	2	0	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0013	3120	2	2	0	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0014	3120	2	0	0	0	0	2	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0015	3120	2	0	0	2	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0016	3120	2	1	1	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0017	3120	2	0	2	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0018	3120	2	1	1	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0019	3120	1	0	0	0	0	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0020	3120	1	0	0	0	0	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0021	3120	1	1	0	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0022	3120	1	0	0	1	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0023	3120	1	0	0	1	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0024	3120	1	0	1	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0025	3120	1	0	0	1	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0026	3120	1	0	0	0	0	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0027	3120	1	0	0	0	1	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0028	3120	1	0	0	1	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0029	3120	1	0	0	0	0	1	copy fasta	ATP12A	chr13	24675408	24717472
ATP12A_chr13_24675408_24717472	0/0	c0030	3120	1	1	0	0	0	0	copy fasta	ATP12A	chr13	24675408	24717472
ATP13A1_chr19_19640198_19668676	1/1	c0001	3615	332	76	57	136	14	47	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0002	3615	7	0	0	7	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0003	3615	5	0	0	5	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0004	3615	5	4	1	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0005	3615	4	4	0	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0006	3615	3	3	0	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0007	3615	3	1	0	0	2	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0008	3615	2	0	0	2	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0009	3615	2	0	0	2	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0010	3615	2	0	2	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0011	3615	2	0	0	2	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0012	3615	2	0	2	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0013	3615	1	0	1	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0014	3615	1	0	1	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0015	3615	1	0	1	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0016	3615	1	1	0	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0017	3615	1	0	0	1	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0018	3615	1	0	0	1	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0019	3615	1	0	1	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0020	3615	1	0	0	1	0	0	copy fasta	ATP13A1	chr19	19640198	19668676