JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SGSH_chr17_80204276_80225333	1/0	c0001	1509	237	44	37	113	13	29	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0002	1509	119	14	31	60	2	12	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0003	1509	20	16	3	0	1	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0004	1509	7	4	3	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0005	1509	6	6	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0006	1510	5	0	0	5	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0007	1509	4	4	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0008	1510	2	0	1	0	0	1	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0009	1509	2	0	0	0	0	2	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0010	1509	2	0	2	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0011	1509	2	0	0	2	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0012	1509	2	2	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0013	1509	1	0	0	0	0	1	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0014	1509	1	0	0	1	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0015	1509	1	0	1	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0016	1509	1	0	0	0	0	1	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0017	1509	1	1	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0018	1509	1	1	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0019	1509	1	0	0	1	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/1	c0020	1509	1	0	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0021	1509	1	0	0	1	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0022	1509	1	0	0	1	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0023	1509	1	1	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSH_chr17_80204276_80225333	0/0	c0024	1509	1	1	0	0	0	0	copy fasta	SGSH	chr17	80204276	80225333
SGSM1_chr22_24801211_24932578	1/1	c0001	3282	205	28	60	76	10	29	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0002	3282	38	7	3	21	0	7	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0003	3282	16	15	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0004	3282	10	1	1	8	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0005	3282	8	7	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0006	3282	6	3	1	0	0	2	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0007	3282	5	3	2	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0008	3282	4	4	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0009	3282	3	0	3	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0010	3282	3	3	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0011	3282	2	0	0	2	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0012	3282	2	0	0	0	0	2	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0013	3282	2	2	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0014	3282	2	0	0	2	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0015	3282	2	0	0	2	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0016	3282	2	2	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0017	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0018	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0019	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0020	3282	1	0	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0021	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0022	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0023	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0024	3282	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0025	3282	1	0	0	0	1	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0026	3282	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578