JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SGSM1_chr22_24801211_24932578	0/0	c0027	3282	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0028	3282	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0029	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0030	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0031	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0032	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0033	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0034	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0035	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0036	3282	1	0	0	0	1	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0037	3282	1	0	1	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0038	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0039	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0040	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0041	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0042	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0043	3282	1	1	0	0	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM1_chr22_24801211_24932578	0/0	c0044	3282	1	0	0	1	0	0	copy fasta	SGSM1	chr22	24801211	24932578
SGSM2_chr17_2332501_2386054	0/0	c0001	3156	184	20	22	119	6	17	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	1/0	c0002	3156	104	6	46	31	5	15	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/1	c0003	3156	51	17	2	19	3	9	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0004	3156	22	17	2	0	1	2	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0005	3156	5	5	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0006	3156	5	5	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0007	3156	3	3	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0008	3156	3	0	0	3	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0009	3156	3	0	0	3	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0010	3156	2	0	0	2	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0011	3156	2	0	0	2	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0012	3156	2	2	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0013	3156	2	2	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0014	3156	1	0	1	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0015	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0016	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0017	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0018	3156	1	0	0	0	0	1	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0019	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0020	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0021	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0022	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0023	3135	1	0	1	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0024	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0025	3156	1	0	1	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0026	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0027	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0028	3156	1	0	0	0	1	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0029	3156	1	0	0	0	0	1	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0030	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0031	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0032	3156	1	0	1	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054