JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SGSM2_chr17_2332501_2386054	0/0	c0033	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0034	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0035	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0036	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0037	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0038	3156	1	0	0	0	0	1	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0039	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0040	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0041	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0042	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0043	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0044	3156	1	0	0	1	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0045	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0046	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM2_chr17_2332501_2386054	0/0	c0047	3156	1	1	0	0	0	0	copy fasta	SGSM2	chr17	2332501	2386054
SGSM3_chr22_40365594_40415289	1/1	c0001	2250	275	84	53	96	10	30	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0002	2250	2	0	2	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0003	2250	2	0	0	2	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0004	2250	2	0	0	2	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0005	2250	1	1	0	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0006	2250	1	0	1	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0007	2250	1	1	0	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0008	2250	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0009	2250	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0010	2250	1	1	0	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0011	2250	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0012	2250	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0013	2250	1	1	0	0	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0014	2250	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGSM3_chr22_40365594_40415289	0/0	c0015	2250	1	0	0	1	0	0	copy fasta	SGSM3	chr22	40365594	40415289
SGTA_chr19_2749715_2788273	1/1	c0001	942	167	23	58	56	13	15	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0002	942	115	5	15	76	5	14	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0003	942	68	38	2	21	0	7	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0004	942	16	0	0	16	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0005	942	10	9	1	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0006	942	6	6	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0007	942	4	4	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0008	942	2	0	1	1	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0009	942	2	2	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0010	942	1	1	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0011	942	1	1	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0012	942	1	1	0	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0013	942	1	0	0	1	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0014	942	1	0	0	1	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTA_chr19_2749715_2788273	0/0	c0015	942	1	0	1	0	0	0	copy fasta	SGTA	chr19	2749715	2788273
SGTB_chr5_65660928_65727109	1/1	c0001	915	357	92	70	148	13	32	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	c0002	915	1	0	0	0	1	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	c0003	915	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SGTB_chr5_65660928_65727109	0/0	c0004	915	1	1	0	0	0	0	copy fasta	SGTB	chr5	65660928	65727109
SH2B1_chr16_28858843_28879205	1/0	c0001	2271	286	50	32	156	10	37	copy fasta	SH2B1	chr16	28858843	28879205