JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH2B1_chr16_28858843_28879205	0/1	c0002	2271	83	27	24	23	2	6	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	c0003	2271	3	3	0	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	c0004	2271	3	0	0	3	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	c0005	2271	1	1	0	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	c0006	2271	1	0	0	1	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	c0007	2271	1	0	0	1	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	c0008	2271	1	0	0	0	0	1	copy fasta	SH2B1	chr16	28858843	28879205
SH2B1_chr16_28858843_28879205	0/0	c0009	2271	1	1	0	0	0	0	copy fasta	SH2B1	chr16	28858843	28879205
SH2B2_chr7_102281868_102326711	1/1	c0001	1899	364	66	69	169	17	41	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0002	1899	14	14	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0003	1899	4	3	1	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0004	1899	3	3	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0005	1899	3	3	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0006	1899	2	2	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0007	1899	2	0	0	2	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0008	1899	2	0	1	0	1	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0009	1899	1	1	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0010	1899	1	0	1	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0011	1899	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0012	1899	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0013	1899	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0014	1899	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0015	1899	1	0	0	0	0	1	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0016	1899	1	0	0	1	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0017	1899	1	0	0	0	0	1	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0018	1899	1	0	0	0	0	1	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0019	1899	1	1	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B2_chr7_102281868_102326711	0/0	c0020	1899	1	1	0	0	0	0	copy fasta	SH2B2	chr7	102281868	102326711
SH2B3_chr12_111400923_111456623	0/1	c0001	1728	244	36	29	142	3	33	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0002	1728	40	36	4	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	1/0	c0003	1728	17	3	10	0	3	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0004	1728	8	0	0	8	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0005	1728	3	3	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0006	1728	2	0	0	2	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0007	1728	2	2	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0008	1728	2	2	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0009	1728	2	2	0	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0010	1728	1	0	1	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0011	1728	1	0	1	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0012	1704	1	0	0	0	0	1	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0013	1728	1	0	0	1	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0014	1728	1	0	1	0	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2B3_chr12_111400923_111456623	0/0	c0015	1728	1	0	0	1	0	0	copy fasta	SH2B3	chr12	111400923	111456623
SH2D1A_chrX_124341563_124378160	1/1	c0001	387	314	78	57	135	10	32	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	c0002	387	1	0	0	0	1	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	c0003	387	1	1	0	0	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	c0004	388	1	0	0	1	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1A_chrX_124341563_124378160	0/0	c0005	387	1	0	0	1	0	0	copy fasta	SH2D1A	chrX	124341563	124378160
SH2D1B_chr1_162390268_162417136	1/1	c0001	399	240	50	38	117	6	27	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	c0002	399	128	37	24	52	4	11	copy fasta	SH2D1B	chr1	162390268	162417136