JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH2D1B_chr1_162390268_162417136	0/0	c0003	399	49	2	14	24	4	5	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	c0004	399	3	3	0	0	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	c0005	399	1	0	0	0	0	1	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	c0006	399	1	0	0	1	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	c0007	399	1	0	0	1	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D1B_chr1_162390268_162417136	0/0	c0008	399	1	0	0	1	0	0	copy fasta	SH2D1B	chr1	162390268	162417136
SH2D2A_chr1_156801243_156821848	0/1	c0001	1170	251	38	46	124	13	29	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	1/0	c0002	1170	147	55	32	39	3	17	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	c0003	1170	2	0	0	2	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	c0004	1170	2	2	0	0	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	c0005	1170	1	1	0	0	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	c0006	1170	1	1	0	0	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	c0007	1170	1	0	0	1	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	c0008	1170	1	0	0	0	0	1	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	c0009	1170	1	0	0	0	0	1	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	c0010	1170	1	0	0	1	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	c0011	1170	1	0	0	1	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D2A_chr1_156801243_156821848	0/0	c0012	1170	1	1	0	0	0	0	copy fasta	SH2D2A	chr1	156801243	156821848
SH2D3A_chr19_6747160_6772435	1/1	c0001	1731	174	8	31	97	10	26	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0002	1731	95	25	21	43	1	5	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0003	1731	38	21	6	0	4	7	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0004	1731	26	9	2	13	1	1	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0005	1731	16	13	2	0	0	1	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0006	1731	9	8	1	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0007	1731	7	0	5	0	0	2	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0008	1731	6	6	0	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0009	1731	1	1	0	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0010	1731	1	1	0	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0011	1731	1	0	0	0	0	1	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0012	1731	1	0	0	1	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0013	1731	1	0	0	1	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0014	1731	1	1	0	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0015	1731	1	1	0	0	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0016	1731	1	0	0	1	0	0	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3A_chr19_6747160_6772435	0/0	c0017	1731	1	0	0	0	0	1	copy fasta	SH2D3A	chr19	6747160	6772435
SH2D3C_chr9_127733317_127783666	0/0	c0001	2583	99	3	24	60	3	9	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0002	2583	75	1	10	51	2	11	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/1	c0003	2583	74	33	21	5	0	14	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0004	2583	28	26	1	0	0	1	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0005	2583	12	11	0	0	1	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	1/0	c0006	2583	10	5	1	1	0	2	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0007	2583	9	0	0	9	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0008	2583	6	2	2	0	1	1	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0009	2583	4	0	0	3	0	1	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0010	2583	2	2	0	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0011	2583	1	1	0	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0012	2583	1	1	0	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0013	2583	1	1	0	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0014	2583	1	0	0	0	0	1	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0015	2583	1	0	1	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666