JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH2D3C_chr9_127733317_127783666	0/0	c0016	2583	1	0	0	0	1	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0017	2583	1	0	1	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0018	2583	1	0	0	1	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0019	2583	1	0	1	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0020	2583	1	0	0	1	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0021	2583	1	0	1	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0022	2583	1	0	1	0	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D3C_chr9_127733317_127783666	0/0	c0023	2583	1	0	0	1	0	0	copy fasta	SH2D3C	chr9	127733317	127783666
SH2D4A_chr8_19308693_19401218	1/1	c0001	1365	154	9	33	79	7	24	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0002	1365	33	4	16	1	4	8	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0003	1365	24	23	1	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0004	1365	23	17	5	0	0	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0005	1365	17	9	3	3	0	2	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0006	1365	13	0	0	13	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0007	1365	12	3	2	5	1	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0008	1365	12	0	0	12	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0009	1365	8	1	0	1	1	5	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0010	1365	7	2	2	0	2	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0011	1365	6	5	1	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0012	1365	6	0	3	3	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0013	1365	3	3	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0014	1365	3	2	1	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0015	1365	2	0	2	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0016	1365	2	2	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0017	1365	2	0	0	2	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0018	1365	2	1	1	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0019	1365	2	2	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0020	1365	2	1	1	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0021	1365	2	2	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0022	1365	2	0	2	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0023	1365	2	2	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0024	1365	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0025	1365	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0026	1365	1	0	1	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0027	1365	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0028	1365	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0029	1365	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0030	1365	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0031	1365	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0032	1365	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0033	1365	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0034	1365	1	0	0	0	1	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0035	1365	1	1	0	0	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0036	1365	1	0	0	1	0	0	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0037	1365	1	0	0	0	0	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4A_chr8_19308693_19401218	0/0	c0038	1365	1	0	0	0	0	1	copy fasta	SH2D4A	chr8	19308693	19401218
SH2D4B_chr10_80532902_80651560	1/0	c0001	1302	94	26	22	21	5	19	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0002	1302	79	10	12	45	4	8	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0003	1302	30	0	0	28	0	2	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0004	1302	22	2	5	15	0	0	copy fasta	SH2D4B	chr10	80532902	80651560