JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH2D4B_chr10_80532902_80651560	0/0	c0005	1302	17	16	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/1	c0006	1302	14	0	11	1	0	1	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0007	1302	11	6	3	0	0	2	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0008	1302	6	5	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0009	1302	4	3	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0010	1302	4	1	2	0	1	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0011	1302	4	4	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0012	1302	4	0	0	4	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0013	1302	4	0	2	2	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0014	1302	4	0	0	4	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0015	1302	3	3	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0016	1302	3	0	0	3	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0017	1302	3	3	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0018	1302	2	2	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0019	1302	2	1	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0020	1302	2	2	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0021	1302	1	0	0	1	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0022	1302	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0023	1302	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0024	1302	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0025	1302	1	0	1	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0026	1302	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0027	1302	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0028	1302	1	0	0	0	0	1	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0029	1302	1	1	0	0	0	0	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D4B_chr10_80532902_80651560	0/0	c0030	1302	1	0	0	0	0	1	copy fasta	SH2D4B	chr10	80532902	80651560
SH2D5_chr1_20714731_20737703	0/1	c0001	1272	365	96	64	157	10	37	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	1/0	c0002	1272	37	1	15	6	5	9	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	c0003	1272	4	0	0	4	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	c0004	1272	1	0	0	1	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	c0005	1272	1	1	0	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	c0006	1272	1	0	0	0	1	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D5_chr1_20714731_20737703	0/0	c0007	1272	1	0	1	0	0	0	copy fasta	SH2D5	chr1	20714731	20737703
SH2D6_chr2_85413714_85442029	1/1	c0001	1008	399	86	70	176	17	48	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	c0002	1008	8	0	0	8	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	c0003	1008	4	4	0	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	c0004	1008	3	3	0	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	c0005	1008	1	0	0	1	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	c0006	1008	1	1	0	0	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	c0007	1008	1	0	0	1	0	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D6_chr2_85413714_85442029	0/0	c0008	1008	1	0	0	0	1	0	copy fasta	SH2D6	chr2	85413714	85442029
SH2D7_chr15_78087561_78109362	1/1	c0001	1356	235	42	48	110	6	27	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0002	1356	91	22	14	34	7	14	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0003	1356	90	25	14	41	4	6	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0004	1356	2	2	0	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0005	1356	2	0	0	2	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0006	1356	2	0	0	0	0	2	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0007	1356	1	0	0	1	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0008	1356	1	0	0	1	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0009	1356	1	0	1	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362