JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH2D7_chr15_78087561_78109362	0/0	c0010	1356	1	0	1	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0011	1356	1	0	1	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0012	1356	1	0	0	0	0	1	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0013	1356	1	0	0	0	1	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0014	1356	1	1	0	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0015	1356	1	0	0	1	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH2D7_chr15_78087561_78109362	0/0	c0016	1356	1	0	1	0	0	0	copy fasta	SH2D7	chr15	78087561	78109362
SH3BGRL2_chr6_79626329_79708655	1/1	c0001	324	347	94	70	131	12	38	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL2_chr6_79626329_79708655	0/0	c0002	324	1	0	0	1	0	0	copy fasta	SH3BGRL2	chr6	79626329	79708655
SH3BGRL3_chr1_26275086_26286522	1/1	c0001	282	421	95	78	188	16	42	copy fasta	SH3BGRL3	chr1	26275086	26286522
SH3BGRL3_chr1_26275086_26286522	0/0	c0002	282	1	1	0	0	0	0	copy fasta	SH3BGRL3	chr1	26275086	26286522
SH3BGRL_chrX_81197102_81303547	1/1	c0001	345	241	67	45	92	9	26	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGRL_chrX_81197102_81303547	0/0	c0002	345	2	2	0	0	0	0	copy fasta	SH3BGRL	chrX	81197102	81303547
SH3BGR_chr21_39446970_39520504	0/0	c0001	534	159	46	29	55	9	20	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	1/1	c0002	531	135	30	27	51	6	19	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	c0003	534	6	3	2	0	0	1	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	c0004	531	1	0	0	0	1	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BGR_chr21_39446970_39520504	0/0	c0005	534	1	1	0	0	0	0	copy fasta	SH3BGR	chr21	39446970	39520504
SH3BP1_chr22_37634669_37661117	1/1	c0001	2106	196	19	33	108	11	23	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0002	2106	77	22	5	49	0	1	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0003	2106	27	3	13	5	5	1	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0004	2106	16	2	10	0	0	4	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0005	2107	9	1	2	3	0	3	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0006	2106	7	3	1	2	0	1	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0007	2107	7	2	0	5	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0008	2106	7	6	1	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0009	2106	6	6	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0010	2106	6	6	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0011	2106	5	5	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0012	2106	4	3	1	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0013	2106	4	3	0	0	1	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0014	2106	4	0	3	0	1	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0015	2106	3	1	1	1	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0016	2106	3	1	1	0	0	1	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0017	2106	2	2	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0018	2106	2	0	0	2	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0019	2106	2	2	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0020	2106	2	0	0	0	0	2	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0021	2106	2	2	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0022	2106	2	0	0	2	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0023	2106	2	1	1	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0024	2106	1	0	1	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0025	2106	1	0	0	0	0	1	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0026	2106	1	0	0	1	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0027	2106	1	1	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0028	2106	1	0	1	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0029	2107	1	0	0	1	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0030	2106	1	1	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0031	2106	1	0	0	1	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0032	2106	1	0	1	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117