JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH3BP1_chr22_37634669_37661117	0/0	c0033	2106	1	1	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0034	2106	1	1	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0035	2106	1	0	0	1	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0036	2106	1	0	0	0	0	1	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0037	2106	1	0	1	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0038	2106	1	0	0	1	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0039	2106	1	1	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP1_chr22_37634669_37661117	0/0	c0040	2107	1	1	0	0	0	0	copy fasta	SH3BP1	chr22	37634669	37661117
SH3BP2_chr4_2788085_2846096	0/1	c0001	1686	129	7	35	64	5	17	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	1/0	c0002	1686	88	2	17	56	3	9	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0003	1686	60	26	10	11	1	12	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0004	1686	54	26	18	2	3	5	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0005	1686	29	19	1	6	2	1	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0006	1686	5	5	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0007	1686	4	4	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0008	1686	2	0	0	0	2	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0009	1686	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0010	1686	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0011	1686	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0012	1686	1	0	1	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0013	1686	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0014	1686	1	0	0	1	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP2_chr4_2788085_2846096	0/0	c0015	1686	1	1	0	0	0	0	copy fasta	SH3BP2	chr4	2788085	2846096
SH3BP4_chr2_234947017_235060714	0/0	c0001	2892	124	25	20	59	1	19	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0002	2892	109	28	10	55	3	13	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	1/1	c0003	2892	59	5	23	14	6	9	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0004	2892	8	5	1	1	1	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0005	2892	6	5	1	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0006	2892	5	0	3	0	0	2	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0007	2892	4	0	4	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0008	2892	4	1	1	0	0	2	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0009	2892	3	3	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0010	2892	2	2	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0011	2892	2	2	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0012	2892	2	0	0	0	2	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0013	2892	2	2	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0014	2892	2	0	0	2	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0015	2892	1	0	0	1	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0016	2892	1	0	0	1	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0017	2892	1	0	1	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0018	2892	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0019	2892	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0020	2892	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0021	2892	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0022	2892	1	0	0	0	0	1	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0023	2892	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0024	2892	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0025	2892	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0026	2892	1	0	0	1	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0027	2892	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714