JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH3BP4_chr2_234947017_235060714	0/0	c0028	2892	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0029	2892	1	0	0	0	1	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP4_chr2_234947017_235060714	0/0	c0030	2892	1	1	0	0	0	0	copy fasta	SH3BP4	chr2	234947017	235060714
SH3BP5L_chr1_248805446_248830915	1/1	c0001	1182	406	90	62	198	16	38	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	c0002	1182	3	3	0	0	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	c0003	1182	1	0	0	0	0	1	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	c0004	1182	1	0	0	0	0	1	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5L_chr1_248805446_248830915	0/0	c0005	1182	1	1	0	0	0	0	copy fasta	SH3BP5L	chr1	248805446	248830915
SH3BP5_chr3_15249353_15337586	1/0	c0001	1368	209	34	33	118	4	19	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/1	c0002	1368	145	51	35	29	8	21	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0003	1368	7	0	4	0	0	3	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0004	1368	3	1	0	0	0	2	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0005	1368	2	0	0	0	0	2	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0006	1368	2	2	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0007	1368	2	2	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0008	1368	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0009	1368	1	1	0	0	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0010	1368	1	0	0	1	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0011	1368	1	0	0	1	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0012	1368	1	0	0	1	0	0	copy fasta	SH3BP5	chr3	15249353	15337586
SH3BP5_chr3_15249353_15337586	0/0	c0013	1368	1	0	0	0	0	1	copy fasta	SH3BP5	chr3	15249353	15337586
SH3D19_chr4_151115281_151330605	1/1	c0001	3144	159	48	35	50	5	19	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0002	3144	42	8	3	28	2	1	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0003	3144	18	17	1	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0004	3144	11	0	3	8	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0005	3144	9	0	1	7	1	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0006	3144	7	0	0	0	0	7	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0007	3144	6	1	3	0	0	2	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0008	3144	5	5	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0009	3144	4	0	0	4	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0010	3144	3	3	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0011	3145	2	0	0	2	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0012	3145	2	0	1	1	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0013	3144	2	0	1	1	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0014	3145	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0015	3145	1	0	1	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0016	3144	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0017	3145	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0018	3145	1	0	0	1	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0019	3144	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0020	3144	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0021	3144	1	0	0	0	0	1	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0022	3144	1	1	0	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0023	3144	1	0	1	0	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0024	3145	1	0	0	1	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D19_chr4_151115281_151330605	0/0	c0025	3144	1	0	0	1	0	0	copy fasta	SH3D19	chr4	151115281	151330605
SH3D21_chr1_36301368_36326347	1/1	c0001	2271	189	70	37	50	6	24	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0002	2271	155	10	35	80	10	20	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0003	2271	18	18	0	0	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0004	2271	4	0	0	4	0	0	copy fasta	SH3D21	chr1	36301368	36326347