JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP13A1_chr19_19640198_19668676	0/0	c0021	3615	1	0	0	1	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0022	3615	1	1	0	0	0	0	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A1_chr19_19640198_19668676	0/0	c0023	3615	1	0	0	0	0	1	copy fasta	ATP13A1	chr19	19640198	19668676
ATP13A2_chr1_16980958_17016928	0/0	c0001	3543	121	8	23	81	3	6	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/1	c0002	3543	95	11	18	44	6	15	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	1/0	c0003	3543	57	17	2	28	0	9	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0004	3543	31	24	7	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0005	3543	13	11	2	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0006	3543	6	0	2	1	0	3	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0007	3543	6	3	1	0	1	1	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0008	3543	5	5	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0009	3543	4	3	1	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0010	3543	4	0	2	0	2	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0011	3543	2	2	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0012	3543	2	2	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0013	3543	2	2	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0014	3543	2	2	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0015	3543	1	0	0	1	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0016	3543	1	1	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0017	3543	1	0	0	1	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0018	3543	1	1	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0019	3543	1	1	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0020	3543	1	0	1	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0021	3543	1	0	0	1	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0022	3543	1	0	0	1	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0023	3543	1	0	0	0	0	1	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0024	3543	1	1	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0025	3543	1	0	1	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0026	3543	1	0	0	0	0	1	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0027	3543	1	1	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0028	3543	1	0	0	0	0	1	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0029	3543	1	1	0	0	0	0	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A2_chr1_16980958_17016928	0/0	c0030	3543	1	0	0	0	0	1	copy fasta	ATP13A2	chr1	16980958	17016928
ATP13A3_chr3_194397677_194492002	1/1	c0001	3771	293	91	43	119	4	34	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	c0002	3771	3	1	2	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	c0003	3771	2	0	2	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	c0004	3771	2	0	0	2	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	c0005	3771	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	c0006	3771	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	c0007	3771	1	0	1	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	c0008	3771	1	0	0	1	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A4_chr3_193393967_193559895	1/1	c0001	3591	112	15	25	52	5	13	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0002	3591	62	9	7	32	1	13	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0003	3591	51	18	15	11	5	2	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0004	3591	26	4	0	22	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0005	3591	10	2	2	6	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0006	3591	10	8	1	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0007	3591	7	5	1	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0008	3591	4	3	0	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	c0009	3591	4	0	1	0	0	3	copy fasta	ATP13A4	chr3	193393967	193559895