JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH3D21_chr1_36301368_36326347	0/0	c0005	2271	2	0	0	0	0	2	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0006	2271	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0007	2271	1	0	1	0	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0008	2271	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0009	2271	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0010	2271	1	0	1	0	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0011	2271	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0012	2271	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3D21_chr1_36301368_36326347	0/0	c0013	2271	1	0	0	1	0	0	copy fasta	SH3D21	chr1	36301368	36326347
SH3GL1_chr19_4355370_4405547	1/0	c0001	1107	202	48	50	60	13	30	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/1	c0002	1107	139	33	24	65	3	13	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0003	1107	6	6	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0004	1107	2	2	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0005	1107	1	1	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0006	1107	1	0	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0007	1107	1	1	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0008	1107	1	0	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0009	1107	1	0	0	1	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0010	1107	1	0	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0011	1107	1	0	1	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0012	1107	1	1	0	0	0	0	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL1_chr19_4355370_4405547	0/0	c0013	1107	1	0	0	0	0	1	copy fasta	SH3GL1	chr19	4355370	4405547
SH3GL2_chr9_17574066_17802124	1/0	c0001	1059	253	74	46	91	14	27	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	c0002	1059	2	2	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	c0003	1059	2	0	0	2	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/1	c0004	1059	1	0	0	0	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	c0005	1059	1	0	0	1	0	0	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL2_chr9_17574066_17802124	0/0	c0006	1059	1	0	0	0	0	1	copy fasta	SH3GL2	chr9	17574066	17802124
SH3GL3_chr15_83442341_83623743	1/1	c0001	1044	296	83	53	117	13	28	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GL3_chr15_83442341_83623743	0/0	c0002	1044	25	1	3	20	1	0	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GL3_chr15_83442341_83623743	0/0	c0003	1044	2	2	0	0	0	0	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GL3_chr15_83442341_83623743	0/0	c0004	1044	1	0	0	1	0	0	copy fasta	SH3GL3	chr15	83442341	83623743
SH3GLB1_chr1_86699576_86753184	1/1	c0001	1098	289	90	44	105	10	38	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	c0002	1098	27	0	12	15	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB1_chr1_86699576_86753184	0/0	c0003	1098	2	0	2	0	0	0	copy fasta	SH3GLB1	chr1	86699576	86753184
SH3GLB2_chr9_129002036_129033331	1/0	c0001	1188	334	85	44	159	10	35	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/1	c0002	1188	84	9	30	26	6	12	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	c0003	1188	9	0	0	9	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	c0004	1188	2	0	2	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	c0005	1188	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	c0006	1188	1	1	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	c0007	1188	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	c0008	1188	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	c0009	1188	1	1	0	0	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	c0010	1188	1	0	0	0	0	1	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3GLB2_chr9_129002036_129033331	0/0	c0011	1188	1	0	0	1	0	0	copy fasta	SH3GLB2	chr9	129002036	129033331
SH3KBP1_chrX_19528977_19892600	1/1	c0001	1998	183	54	39	62	6	20	copy fasta	SH3KBP1	chrX	19528977	19892600
SH3KBP1_chrX_19528977_19892600	0/0	c0002	1998	8	8	0	0	0	0	copy fasta	SH3KBP1	chrX	19528977	19892600
SH3KBP1_chrX_19528977_19892600	0/0	c0003	1998	5	3	1	1	0	0	copy fasta	SH3KBP1	chrX	19528977	19892600
SH3KBP1_chrX_19528977_19892600	0/0	c0004	1998	2	0	0	2	0	0	copy fasta	SH3KBP1	chrX	19528977	19892600