JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH3PXD2B_chr5_172328499_172459525	0/0	c0020	2736	1	1	0	0	0	0	copy fasta	SH3PXD2B	chr5	172328499	172459525
SH3RF1_chr4_169089259_169275956	1/0	c0001	2667	119	50	10	32	7	19	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/1	c0002	2667	42	22	10	3	2	4	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0003	2667	22	2	5	7	3	5	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0004	2667	14	1	0	12	0	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0005	2667	3	3	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0006	2667	3	3	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0007	2667	2	0	0	2	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0008	2667	1	0	0	0	0	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0009	2667	1	0	0	0	0	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0010	2667	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0011	2667	1	0	0	1	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0012	2667	1	0	1	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0013	2667	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0014	2667	1	0	0	1	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0015	2667	1	0	0	0	0	1	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0016	2667	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0017	2667	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF1_chr4_169089259_169275956	0/0	c0018	2667	1	1	0	0	0	0	copy fasta	SH3RF1	chr4	169089259	169275956
SH3RF2_chr5_145931578_146068292	0/1	c0001	2190	90	22	19	36	4	8	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0002	2190	77	14	18	31	5	9	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0003	2190	49	1	12	26	3	7	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0004	2190	7	7	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0005	2190	6	6	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0006	2190	5	3	0	1	0	1	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	1/0	c0007	2190	5	4	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0008	2190	5	5	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0009	2190	3	1	2	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0010	2190	3	3	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0011	2190	2	2	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0012	2190	1	1	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0013	2190	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0014	2190	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0015	2180	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0016	2190	1	0	1	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0017	2190	1	1	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0018	2190	1	1	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0019	2190	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0020	2190	1	0	0	0	0	1	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0021	2190	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0022	2190	1	0	0	0	0	1	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0023	2190	1	0	0	0	0	1	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0024	2190	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0025	2190	1	1	0	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0026	2190	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0027	2190	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0028	2190	1	0	1	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0029	2190	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0030	2190	1	0	0	1	0	0	copy fasta	SH3RF2	chr5	145931578	146068292
SH3RF2_chr5_145931578_146068292	0/0	c0031	2190	1	0	1	0	0	0	copy fasta	SH3RF2	chr5	145931578	146068292