JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SH3RF3_chr2_109124205_109509634	0/0	c0001	2649	104	33	26	29	1	15	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0002	2649	15	0	7	4	1	3	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0003	2649	14	13	1	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0004	2649	6	6	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0005	2649	5	3	0	1	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0006	2649	4	0	0	4	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0007	2649	2	2	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0008	2649	2	2	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0009	2649	2	0	0	1	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0010	2649	2	2	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0011	2649	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0012	2649	1	0	1	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0013	2649	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0014	2649	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0015	2649	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0016	2649	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0017	2649	1	0	1	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0018	2649	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0019	2649	1	0	0	0	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0020	2649	1	0	0	0	0	1	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0021	2649	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0022	2649	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0023	2649	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0024	2649	1	0	0	1	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0025	2649	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3RF3_chr2_109124205_109509634	0/0	c0026	2649	1	1	0	0	0	0	copy fasta	SH3RF3	chr2	109124205	109509634
SH3TC1_chr4_8194290_8246103	0/0	c0001	4011	82	12	17	46	1	6	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0002	4011	40	14	12	10	3	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0003	4011	32	0	4	20	4	4	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0004	4011	25	2	6	10	2	5	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0005	4011	21	3	2	12	4	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0006	4011	15	1	3	5	0	6	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0007	4011	8	0	0	7	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/1	c0008	4011	7	0	5	1	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0009	4011	6	0	0	5	1	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0010	4011	6	6	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0011	4011	5	1	4	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0012	4011	5	1	2	0	0	2	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0013	4011	4	4	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0014	4011	4	1	2	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0015	4011	3	3	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0016	4011	3	0	0	0	0	3	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0017	4011	3	3	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0018	4011	3	0	3	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0019	4011	3	3	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0020	4011	3	2	0	0	0	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0021	4011	3	3	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0022	4011	3	0	1	0	1	1	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0023	4011	3	3	0	0	0	0	copy fasta	SH3TC1	chr4	8194290	8246103
SH3TC1_chr4_8194290_8246103	0/0	c0024	4011	2	0	0	0	0	2	copy fasta	SH3TC1	chr4	8194290	8246103